(
( "core::Cons_O::setf_car" "core:cons-setf-car" "/home/meister/Dev/clasp/include/clasp/core/cons.h:260:3")
( "core::Cons_O::setf_cdr" "core:cons-setf-cdr" "/home/meister/Dev/clasp/include/clasp/core/cons.h:302:3")
( "core::Float_O::castToInteger" "core:castToInteger" "/home/meister/Dev/clasp/include/clasp/core/numbers.h:421:3")
( "core::Environment_O::lexicalEnvironmentP" "lexicalEnvironmentP" "/home/meister/Dev/clasp/include/clasp/core/environment.h:95:3")
( "core::Environment_O::functionContainerEnvironmentP" "functionContainerEnvironmentP" "/home/meister/Dev/clasp/include/clasp/core/environment.h:96:3")
( "core::Environment_O::unwindProtectEnvironmentP" "unwindProtectEnvironmentP" "/home/meister/Dev/clasp/include/clasp/core/environment.h:97:3")
( "core::Environment_O::setf_metadata" "setf_metadata" "/home/meister/Dev/clasp/include/clasp/core/environment.h:111:3")
( "core::Environment_O::push_metadata" "push_metadata" "/home/meister/Dev/clasp/include/clasp/core/environment.h:118:3")
( "core::UnwindProtectEnvironment_O::cleanupForm" "UnwindProtectEnvironment-cleanupForm" "/home/meister/Dev/clasp/include/clasp/core/environment.h:518:3")
( "core::Symbol_O::specialP" "core:specialp" "/home/meister/Dev/clasp/include/clasp/core/symbol.h:120:3")
( "core::Instance_O::hasCreator" "core:hasCreator" "/home/meister/Dev/clasp/include/clasp/core/metaClass.h:184:3")
( "core::SourceFileInfo_O::pathname" "SourceFileInfo-pathname" "/home/meister/Dev/clasp/include/clasp/core/sourceFileInfo.h:72:3")
( "core::SourceFileInfo_O::useLineno" "SourceFileInfo-useLineno" "/home/meister/Dev/clasp/include/clasp/core/sourceFileInfo.h:76:3")
( "core::SourceFileInfo_O::sourceDebugOffset" "SourceFileInfo-sourceDebugOffset" "/home/meister/Dev/clasp/include/clasp/core/sourceFileInfo.h:77:3")
( "core::Array_O::arrayHasFillPointerP" "cl:arrayHasFillPointerP" "/home/meister/Dev/clasp/include/clasp/core/array.h:63:3")
( "core::Array_O::rowMajorAset" "core:rowMajorAset" "/home/meister/Dev/clasp/include/clasp/core/array.h:68:3")
( "core::Array_O::rowMajorAref" "cl:rowMajorAref" "/home/meister/Dev/clasp/include/clasp/core/array.h:69:3")
( "core::Array_O::rank" "cl:array-rank" "/home/meister/Dev/clasp/include/clasp/core/array.h:82:3")
( "core::Array_O::elementType" "cl:array-elementType" "/home/meister/Dev/clasp/include/clasp/core/array.h:98:3")
( "core::Array_O::arrayDimension" "cl:array-dimension" "/home/meister/Dev/clasp/include/clasp/core/array.h:108:3")
( "core::Array_O::svref" "cl:svref" "/home/meister/Dev/clasp/include/clasp/core/array.h:125:3")
( "core::Array_O::setf_svref" "core:setf-svref" "/home/meister/Dev/clasp/include/clasp/core/array.h:126:3")
( "core::Array_O::arrayFill" "core:array-fill" "/home/meister/Dev/clasp/include/clasp/core/array.h:129:3")
( "core::Array_O::fillArrayWithElt" "core:fill-array-with-elt" "/home/meister/Dev/clasp/include/clasp/core/array.h:136:3")
( "core::Vector_O::adjustableArrayP" "adjustableArrayP" "/home/meister/Dev/clasp/include/clasp/core/lispVector.h:58:3")
( "core::HashTable_O::hashTableTest" "hash-table-test" "/home/meister/Dev/clasp/include/clasp/core/hashTable.h:101:3")
( "core::HashTable_O::hashTableRehashSize" "hash-table-rehash-size" "/home/meister/Dev/clasp/include/clasp/core/hashTable.h:107:3")
( "core::HashTable_O::hashTableRehashThreshold" "hash-table-rehash-threshold" "/home/meister/Dev/clasp/include/clasp/core/hashTable.h:109:3")
( "core::Str_O::size" "core:size" "/home/meister/Dev/clasp/include/clasp/core/str.h:67:3")
( "geom::OVector2_O::setAll" "setAll" "/home/meister/Dev/clasp/projects/cando/include/cando/geom/ovector2.h:28:2")
( "geom::OVector2_O::getX" "x" "/home/meister/Dev/clasp/projects/cando/include/cando/geom/ovector2.h:29:2")
( "geom::OVector2_O::getY" "y" "/home/meister/Dev/clasp/projects/cando/include/cando/geom/ovector2.h:30:2")
( "geom::OVector2_O::sub" "sub" "/home/meister/Dev/clasp/projects/cando/src/geom/ovector2.cc:46:5")
( "geom::OVector2_O::magnitude" "vector2-magnitude" "/home/meister/Dev/clasp/projects/cando/src/geom/ovector2.cc:52:5")
( "geom::OVector2_O::dotProduct" "dotProduct" "/home/meister/Dev/clasp/projects/cando/src/geom/ovector2.cc:59:5")
( "geom::OVector2_O::add" "add" "/home/meister/Dev/clasp/projects/cando/src/geom/ovector2.cc:82:5")
( "geom::OVector2_O::timesScalar" "timesScalar" "/home/meister/Dev/clasp/projects/cando/src/geom/ovector2.cc:97:1")
( "geom::OVector2_O::normalized" "normalized" "/home/meister/Dev/clasp/projects/cando/src/geom/ovector2.cc:104:5")
( "geom::OVector2_O::angle" "vector2-angle" "/home/meister/Dev/clasp/projects/cando/src/geom/ovector2.cc:110:1")
( "geom::OVector2_O::distance" "vector2-distance" "/home/meister/Dev/clasp/projects/cando/src/geom/ovector2.cc:115:1")
( "chem::Matter_O::getId" "getId" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/matter.h:148:3")
( "chem::Matter_O::copy" "matter-copy" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/matter.h:159:3")
( "chem::Matter_O::getProperties" "getProperties" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/matter.h:220:3")
( "chem::Matter_O::numberOfAtoms" "numberOfAtoms" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/matter.h:233:3")
( "chem::Matter_O::setName" "setName" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/matter.h:254:3")
( "chem::Matter_O::getName_notConst" "getName" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/matter.h:256:3")
( "chem::Matter_O::isAggregate" "isAggregate" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/matter.h:276:3")
( "chem::Matter_O::isMolecule" "isMolecule" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/matter.h:277:3")
( "chem::Matter_O::isResidue" "isResidue" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/matter.h:278:3")
( "chem::Matter_O::isAtom" "isAtom" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/matter.h:279:3")
( "chem::Matter_O::contentAt" "contentAt" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/matter.h:311:3")
( "chem::Matter_O::contentSize" "contentSize" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/matter.h:312:3")
( "core::SNode_O::object" "core:object" "/home/meister/Dev/clasp/include/clasp/core/serialize.h:72:3")
( "core::SNode_O::keys" "core:keys" "/home/meister/Dev/clasp/include/clasp/core/serialize.h:73:3")
( "core::SNode_O::getKind" "core:getNodeKind" "/home/meister/Dev/clasp/include/clasp/core/serialize.h:91:3")
( "core::SNode_O::getAttributes" "core:getAttributes" "/home/meister/Dev/clasp/include/clasp/core/serialize.h:93:3")
( "core::SNode_O::getUniqueId" "core:getUniqueId" "/home/meister/Dev/clasp/include/clasp/core/serialize.h:96:3")
( "core::SNode_O::childWithUniqueId" "core:childWithUniqueId" "/home/meister/Dev/clasp/include/clasp/core/serialize.h:97:3")
( "core::SNode_O::getVectorSNodes" "core:getVectorSNodes" "/home/meister/Dev/clasp/include/clasp/core/serialize.h:98:3")
( "core::SNode_O::setKind" "core:setNodeKind" "/home/meister/Dev/clasp/include/clasp/core/serialize.h:109:3")
( "core::SNode_O::setVectorSNodesUnsafe" "core:setVectorSNodes" "/home/meister/Dev/clasp/include/clasp/core/serialize.h:110:3")
( "core::SNode_O::setAttributesUnsafe" "core:setAttributes" "/home/meister/Dev/clasp/include/clasp/core/serialize.h:111:3")
( "chem::Atom_O::isAromatic" "isAromatic" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/atom.h:219:2")
( "chem::Atom_O::setIsAromatic" "setIsAromatic" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/atom.h:220:2")
( "chem::Atom_O::atomName" "atomName" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/atom.h:224:9")
( "chem::Atom_O::getAtomId" "getAtomId" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/atom.h:236:2")
( "chem::Atom_O::getAlias" "getAlias" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/atom.h:240:2")
( "chem::Atom_O::setAlias" "setAlias" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/atom.h:241:2")
( "chem::Atom_O::getFlags" "getFlags" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/atom.h:244:2 <Spelling=/home/meister/Dev/clasp/projects/cando/include/cando/chem/atom.h:48:21>")
( "chem::Atom_O::resetFlags" "resetFlags" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/atom.h:245:2")
( "chem::Atom_O::turnOnFlags" "turnOnFlags" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/atom.h:246:2")
( "chem::Atom_O::turnOffFlags" "turnOffFlags" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/atom.h:247:2")
( "chem::Atom_O::testAllFlags" "testAllFlags" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/atom.h:249:2")
( "chem::Atom_O::testAnyFlags" "testAnyFlags" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/atom.h:250:2")
( "chem::Atom_O::isInRing" "isInRing" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/atom.h:252:2")
( "chem::Atom_O::getRingMembershipCount" "getRingMembershipCount" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/atom.h:256:2")
( "chem::Atom_O::setRingMembershipCount" "setRingMembershipCount" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/atom.h:257:2")
( "chem::Atom_O::getType" "getType" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/atom.h:269:9")
( "chem::Atom_O::setType" "setType" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/atom.h:270:2")
( "chem::Atom_O::getHybridization" "getHybridization" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/atom.h:271:9")
( "chem::Atom_O::setHybridization" "setHybridization" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/atom.h:273:2")
( "chem::Atom_O::getElement" "getElement" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/atom.h:277:2")
( "chem::Atom_O::setElement" "setElement" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/atom.h:280:2")
( "chem::Atom_O::getSelected" "getSelected" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/atom.h:285:2")
( "chem::Atom_O::setSelected" "setSelected" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/atom.h:286:2")
( "chem::Atom_O::getPosition" "getPosition" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/atom.h:287:2")
( "chem::Atom_O::getPositionInNanometers" "getPositionInNanometers" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/atom.h:288:2")
( "chem::Atom_O::setPosition" "setPosition" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/atom.h:290:2")
( "chem::Atom_O::getTouched" "getTouched" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/atom.h:303:2")
( "chem::Atom_O::setTouched" "setTouched" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/atom.h:304:2")
( "chem::Atom_O::getMembershipAr1" "getMembershipAr1" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/atom.h:305:2")
( "chem::Atom_O::setMembershipAr1" "setMembershipAr1" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/atom.h:306:2")
( "chem::Atom_O::getMembershipAr2" "getMembershipAr2" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/atom.h:307:2")
( "chem::Atom_O::setMembershipAr2" "setMembershipAr2" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/atom.h:308:2")
( "chem::Atom_O::getMembershipAr3" "getMembershipAr3" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/atom.h:309:2")
( "chem::Atom_O::setMembershipAr3" "setMembershipAr3" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/atom.h:310:2")
( "chem::Atom_O::getMembershipAr4" "getMembershipAr4" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/atom.h:311:2")
( "chem::Atom_O::setMembershipAr4" "setMembershipAr4" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/atom.h:312:2")
( "chem::Atom_O::getMembershipAr5" "getMembershipAr5" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/atom.h:313:2")
( "chem::Atom_O::setMembershipAr5" "setMembershipAr5" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/atom.h:314:2")
( "chem::Atom_O::getIonization" "getIonization" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/atom.h:315:2")
( "chem::Atom_O::setIonization" "setIonization" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/atom.h:316:2")
( "chem::Atom_O::getCharge" "getCharge" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/atom.h:317:2")
( "chem::Atom_O::setCharge" "setCharge" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/atom.h:318:2")
( "chem::Atom_O::getOccupancy" "getOccupancy" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/atom.h:319:2")
( "chem::Atom_O::setOccupancy" "setOccupancy" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/atom.h:320:2")
( "chem::Atom_O::getTempFactor" "getTempFactor" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/atom.h:321:2")
( "chem::Atom_O::setTempFactor" "setTempFactor" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/atom.h:322:2")
( "chem::Atom_O::getVdwRadius" "getVdwRadius" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/atom.h:323:2")
( "chem::Atom_O::setVdwRadius" "setVdwRadius" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/atom.h:324:2")
( "chem::Atom_O::getCovalentRadius" "getCovalentRadius" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/atom.h:325:2")
( "chem::Atom_O::setCovalentRadius" "setCovalentRadius" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/atom.h:326:2")
( "chem::Atom_O::getMoeIndex" "getMoeIndex" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/atom.h:331:2")
( "chem::Atom_O::setMoeIndex" "setMoeIndex" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/atom.h:332:2")
( "chem::Atom_O::setMoeType" "setMoeType" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/atom.h:333:2")
( "chem::Atom_O::getMoeType" "getMoeType" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/atom.h:334:2")
( "chem::Atom_O::setSeenId" "setSeenId" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/atom.h:349:2")
( "chem::Atom_O::getSeenId" "getSeenId" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/atom.h:351:2")
( "chem::Atom_O::setBackCount" "setBackCount" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/atom.h:352:2")
( "chem::Atom_O::getBackCount" "getBackCount" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/atom.h:353:2")
( "chem::Atom_O::setBackSpan" "setBackSpan" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/atom.h:356:2")
( "chem::Atom_O::setNextSpan" "setNextSpan" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/atom.h:360:2")
( "chem::Atom_O::flagsSet" "flagsSet" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/atom.h:378:2")
( "chem::Atom_O::getRelativePriority" "getRelativePriority" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/atom.h:438:2")
( "chem::Atom_O::setStereochemistryType" "setStereochemistryType" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/atom.h:443:2")
( "chem::Atom_O::getStereochemistryType" "getStereochemistryType" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/atom.h:447:2")
( "chem::Atom_O::getConfiguration" "getConfiguration" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/atom.h:448:2")
( "chem::Residue_O::getPdbName" "getPdbName" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/residue.h:129:2")
( "chem::Residue_O::setPdbName" "setPdbName" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/residue.h:130:2")
( "chem::Residue_O::getFileSequenceNumber" "getFileSequenceNumber" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/residue.h:133:2")
( "chem::Residue_O::getNetCharge" "getNetCharge" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/residue.h:138:2")
( "chem::Residue_O::setNetCharge" "setNetCharge" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/residue.h:139:2")
( "chem::Residue_O::atomWithName" "atomWithName" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/residue.h:174:2")
( "chem::Residue_O::hasAtomWithName" "hasAtomWithName" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/residue.h:183:2")
( "chem::Residue_O::atomWithId" "atomWithId" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/residue.h:190:9")
( "chem::Residue_O::hasAtomWithId" "hasAtomWithId" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/residue.h:191:2")
( "chem::Residue_O::firstAtom" "firstAtom" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/residue.h:201:2")
( "chem::Residue_O::testResidueConsistancy" "testResidueConsistancy" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/residue.h:206:2")
( "chem::Molecule_O::firstResidue" "firstResidue" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/molecule.h:67:2")
( "chem::Molecule_O::getResidue" "getResidue" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/molecule.h:68:2")
( "chem::Molecule_O::residueWithId" "residueWithId" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/molecule.h:69:2")
( "chem::Molecule_O::hasResidueWithId" "hasResidueWithId" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/molecule.h:70:2")
( "chem::Molecule_O::residueCount" "residueCount" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/molecule.h:86:2")
( "chem::Molecule_O::testMoleculeConsistancy" "testMoleculeConsistancy" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/molecule.h:93:2")
( "chem::Aggregate_O::addMolecule" "addMolecule" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/aggregate.h:74:5")
( "chem::Aggregate_O::testAggregateConsistancy" "testAggregateConsistancy" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/aggregate.h:91:5")
( "chem::Aggregate_O::molecules" "molecules" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/aggregate.h:97:5")
( "chem::Aggregate_O::saveAs" "saveAs" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/aggregate.h:117:5")
( "chem::ChemInfoMatch_O::tag" "tag" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/chemInfo.h:60:5")
( "chem::ChemInfo_O::compilerMessage" "compilerMessage" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/chemInfo.h:1105:5")
( "chem::ChemInfo_O::compileSucceeded" "compileSucceeded" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/chemInfo.h:1122:5")
( "chem::ChemInfo_O::getCode" "getCode" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/chemInfo.h:1126:5")
( "adapt::QDomNode_O::isNamed" "isNamed" "/home/meister/Dev/clasp/projects/cando/include/cando/adapt/quickDom.h:74:5")
( "adapt::QDomNode_O::getLocalName" "getLocalName" "/home/meister/Dev/clasp/projects/cando/include/cando/adapt/quickDom.h:75:5")
( "adapt::QDomNode_O::setLocalName" "setLocalName" "/home/meister/Dev/clasp/projects/cando/include/cando/adapt/quickDom.h:76:5")
( "adapt::QDomNode_O::getLineNumber" "getLineNumber" "/home/meister/Dev/clasp/projects/cando/include/cando/adapt/quickDom.h:85:5")
( "adapt::QDomNode_O::getCharacters" "getCharacters" "/home/meister/Dev/clasp/projects/cando/include/cando/adapt/quickDom.h:86:5")
( "adapt::QDomNode_O::setCharacters" "setCharacters" "/home/meister/Dev/clasp/projects/cando/include/cando/adapt/quickDom.h:100:5")
( "adapt::QDomNode_O::saveAs" "saveAs" "/home/meister/Dev/clasp/projects/cando/include/cando/adapt/quickDom.h:106:5")
( "adapt::QDomNode_O::numberOfChildren" "numberOfChildren" "/home/meister/Dev/clasp/projects/cando/include/cando/adapt/quickDom.h:129:5")
( "adapt::QDomNode_O::hasAttribute" "hasAttribute" "/home/meister/Dev/clasp/projects/cando/include/cando/adapt/quickDom.h:133:5")
( "adapt::QDomNode_O::removeAttribute" "removeAttribute" "/home/meister/Dev/clasp/projects/cando/include/cando/adapt/quickDom.h:137:5")
( "adapt::QDomNode_O::getAttributeValueNoError" "getAttribute" "/home/meister/Dev/clasp/projects/cando/include/cando/adapt/quickDom.h:142:5")
( "adapt::QDomNode_O::getAttributeDouble" "getAttributeDouble" "/home/meister/Dev/clasp/projects/cando/include/cando/adapt/quickDom.h:212:5")
( "adapt::QDomNode_O::getAttributeIntDefault" "getAttributeIntDefault" "/home/meister/Dev/clasp/projects/cando/include/cando/adapt/quickDom.h:244:5")
( "adapt::QDomNode_O::addAttributeString" "addAttributeString" "/home/meister/Dev/clasp/projects/cando/include/cando/adapt/quickDom.h:316:5")
( "adapt::QDomNode_O::addAttributeDouble" "addAttributeDouble" "/home/meister/Dev/clasp/projects/cando/include/cando/adapt/quickDom.h:319:5")
( "adapt::QDomNode_O::addAttributeDoubleScientific" "addAttributeDoubleScientific" "/home/meister/Dev/clasp/projects/cando/include/cando/adapt/quickDom.h:346:5")
( "adapt::QDomNode_O::addAttributeInt" "addAttributeInt" "/home/meister/Dev/clasp/projects/cando/include/cando/adapt/quickDom.h:367:5")
( "chem::EnergyComponent_O::enable" "enable" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/energyComponent.h:299:2")
( "chem::EnergyComponent_O::disable" "disable" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/energyComponent.h:300:2")
( "chem::EnergyComponent_O::enableDebug" "enableDebug" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/energyComponent.h:301:2")
( "chem::EnergyComponent_O::disableDebug" "disableDebug" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/energyComponent.h:302:2")
( "chem::EnergyComponent_O::setDebug_NumberOfTermsToCalculate" "setDebug_NumberOfTermsToCalculate" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/energyComponent.h:303:2")
( "chem::EnergyComponent_O::setErrorThreshold" "setErrorThreshold" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/energyComponent.h:305:2")
( "chem::EnergyComponent_O::getErrorThreshold" "getErrorThreshold" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/energyComponent.h:306:2")
( "chem::EnergyComponent_O::getEnergy" "getEnergy" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/energyComponent.h:313:5")
( "chem::EnergyFunction_O::atomTable" "atomTable" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/energyFunction.h:173:5")
( "chem::EnergyFunction_O::getMatter" "getMatter" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/energyFunction.h:187:5")
( "chem::EnergyFunction_O::getStretchComponent" "getStretchComponent" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/energyFunction.h:199:5")
( "chem::EnergyFunction_O::getAngleComponent" "getAngleComponent" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/energyFunction.h:201:5")
( "chem::EnergyFunction_O::getDihedralComponent" "getDihedralComponent" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/energyFunction.h:202:5")
( "chem::EnergyFunction_O::getNonbondComponent" "getNonbondComponent" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/energyFunction.h:203:5")
( "chem::EnergyFunction_O::getChiralRestraintComponent" "getChiralRestraintComponent" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/energyFunction.h:204:5")
( "chem::EnergyFunction_O::getAnchorRestraintComponent" "getAnchorRestraintComponent" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/energyFunction.h:205:5")
( "chem::EnergyFunction_O::getImproperRestraintComponent" "getImproperRestraintComponent" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/energyFunction.h:206:5")
( "chem::EnergyFunction_O::getFixedNonbondRestraintComponent" "getFixedNonbondRestraintComponent" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/energyFunction.h:207:5")
( "chem::EnergyFunction_O::getTotalEnergy" "getTotalEnergy" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/energyFunction.h:216:5")
( "chem::EnergyFunction_O::getMessage" "getMessage" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/energyFunction.h:227:5")
( "chem::EnergyFunction_O::setName" "setName" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/energyFunction.h:239:5")
( "chem::EnergyFunction_O::getName" "getName" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/energyFunction.h:240:5")
( "chem::Bond_O::getAtom1" "getAtom1" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/bond.h:67:3")
( "chem::Bond_O::getAtom2" "getAtom2" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/bond.h:68:3")
( "chem::Bond_O::getOrder" "getOrder" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/bond.h:70:3")
( "chem::Bond_O::setOrderFromInt" "setOrder" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/bond.h:74:3")
( "chem::FFTypesDb_O::numberOfRules" "FFTypes-numberOfRules" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/ffTypesDb.h:59:5")
( "core::SaveArchive_O::put" "put" "/home/meister/Dev/clasp/src/core/serialize.cc:372:1")
( "core::LoadArchive_O::contains" "loadArchive-contains" "/home/meister/Dev/clasp/src/core/serialize.cc:465:1")
( "core::LoadArchive_O::get" "loadArchive-get" "/home/meister/Dev/clasp/src/core/serialize.cc:477:1")
( "core::LoadArchive_O::getContents" "loadArchive-getContents" "/home/meister/Dev/clasp/src/core/serialize.cc:490:1")
( "core::LoadArchive_O::keys" "loadArchive-keys" "/home/meister/Dev/clasp/src/core/serialize.cc:498:1")
( "core::Iterator_O::first" "core:begin" "/home/meister/Dev/clasp/include/clasp/core/iterator.h:63:3")
( "core::Iterator_O::next" "next" "/home/meister/Dev/clasp/include/clasp/core/iterator.h:67:3")
( "core::Iterator_O::isDone" "isDone" "/home/meister/Dev/clasp/include/clasp/core/iterator.h:71:3")
( "core::Iterator_O::notDone" "notDone" "/home/meister/Dev/clasp/include/clasp/core/iterator.h:75:3")
( "core::Iterator_O::currentObject" "currentObject" "/home/meister/Dev/clasp/include/clasp/core/iterator.h:76:3")
( "core::Path_O::isAbsolute" "isAbsolute" "/home/meister/Dev/clasp/include/clasp/core/fileSystem.h:69:3")
( "adapt::StringSet_O::size" "size" "/home/meister/Dev/clasp/projects/cando/include/cando/adapt/stringSet.h:77:3")
( "adapt::StringSet_O::insert" "insert" "/home/meister/Dev/clasp/projects/cando/include/cando/adapt/stringSet.h:81:3")
( "adapt::StringSet_O::removeAll" "removeAll" "/home/meister/Dev/clasp/projects/cando/include/cando/adapt/stringSet.h:104:3")
( "adapt::StringSet_O::cartesianProduct" "cartesianProduct" "/home/meister/Dev/clasp/projects/cando/include/cando/adapt/stringSet.h:107:3")
( "core::SmallMap_O::size" "map_size" "/home/meister/Dev/clasp/include/clasp/core/smallMap.h:58:3")
( "core::SmallMap_O::capacity" "map_capacity" "/home/meister/Dev/clasp/include/clasp/core/smallMap.h:59:3")
( "adapt::SymbolSet_O::size" "size" "/home/meister/Dev/clasp/projects/cando/include/cando/adapt/symbolSet.h:86:3")
( "adapt::SymbolSet_O::insert" "insert" "/home/meister/Dev/clasp/projects/cando/include/cando/adapt/symbolSet.h:90:3")
( "adapt::SymbolSet_O::removeAll" "removeAll" "/home/meister/Dev/clasp/projects/cando/include/cando/adapt/symbolSet.h:113:3")
( "chem::Entity_O::getName" "getName" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/entity.h:51:5")
( "chem::Entity_O::expandedRepresentativeList" "expandedRepresentativeList" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/entity.h:62:5")
( "chem::Entity_O::hasConstitution" "hasConstitution" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/entity.h:70:5")
( "chem::EntityNameSetBase_O::getMonomerNameWithAtoms" "getMonomerNameWithAtoms" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/entityNameSet.h:80:5")
( "chem::EntityNameSetBase_O::supportsInterestingAtomAliases" "supportsInterestingAtomAliases" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/entityNameSet.h:136:5")
( "chem::EntityNameSetBase_O::setInterestingAtomNamesForMonomerName" "setInterestingAtomNamesForMonomerName" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/entityNameSet.h:137:5")
( "chem::EntityNameSetBase_O::getInterestingAtomNamesForMonomerName" "getInterestingAtomNamesForMonomerName" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/entityNameSet.h:138:5")
( "chem::EntityNameSetBase_O::getInterestingAtomAliasesAsString" "getInterestingAtomAliasesAsString" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/entityNameSet.h:144:5")
( "chem::EntityNameSetBase_O::testEntityNameSetBase" "testEntityNameSetBase" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/entityNameSet.h:159:5")
( "chem::EntityNameSet_O::setName" "setName" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/entityNameSet.h:193:5")
( "chem::EntityNameSet_O::getName" "getName" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/entityNameSet.h:194:2")
( "chem::Monomer_O::setId" "setId" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/monomer.h:137:2")
( "chem::Monomer_O::getId" "getId" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/monomer.h:138:2")
( "chem::Monomer_O::setSelected" "setSelected" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/monomer.h:141:2")
( "chem::Monomer_O::isSelected" "isSelected" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/monomer.h:142:2")
( "chem::Monomer_O::getTemporaryResidue" "getTemporaryResidue" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/monomer.h:145:2")
( "chem::Monomer_O::recognizesAlias" "recognizesAlias" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/monomer.h:156:2")
( "chem::Monomer_O::setComment" "setComment" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/monomer.h:165:2")
( "chem::Monomer_O::getComment" "getComment" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/monomer.h:166:2")
( "chem::Monomer_O::getSequenceNumber" "getSequenceNumber" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/monomer.h:183:2")
( "chem::Monomer_O::getName" "getName" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/monomer.h:265:9")
( "chem::CandoDatabase_O::getName" "getName" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/candoDatabase.h:123:5")
( "chem::CandoDatabase_O::getFrameRecognizer" "getFrameRecognizer" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/candoDatabase.h:152:2")
( "chem::CandoDatabase_O::recognizesEntityName" "recognizesEntityName" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/candoDatabase.h:201:2")
( "chem::EntityNameSetBase_O::getUnExpandedNames" "getUnExpandedNames" "/home/meister/Dev/clasp/projects/cando/src/chem/entityNameSet.cc:56:5")
( "chem::EntityNameSetBase_O::getInterestingAtomAliasIndex" "getInterestingAtomAliasIndex" "/home/meister/Dev/clasp/projects/cando/src/chem/entityNameSet.cc:120:5")
( "chem::EntityNameSetBase_O::expandedNameSet" "expandedNameSet" "/home/meister/Dev/clasp/projects/cando/src/chem/entityNameSet.cc:136:5")
( "chem::EntityNameSetBase_O::expandToTerminalEntityNames" "expandToTerminalEntityNames" "/home/meister/Dev/clasp/projects/cando/src/chem/entityNameSet.cc:152:5")
( "chem::EntityNameSetBase_O::contractEntityNames" "contractEntityNames" "/home/meister/Dev/clasp/projects/cando/src/chem/entityNameSet.cc:159:5")
( "chem::EntityNameSetBase_O::addMonomerName" "addMonomerName" "/home/meister/Dev/clasp/projects/cando/src/chem/entityNameSet.cc:229:5")
( "chem::EntityNameSetBase_O::setGroupNames" "setGroupNames" "/home/meister/Dev/clasp/projects/cando/src/chem/entityNameSet.cc:244:5")
( "chem::EntityNameSetBase_O::addMonomerNameNoChecks" "addMonomerNameNoChecks" "/home/meister/Dev/clasp/projects/cando/src/chem/entityNameSet.cc:250:5")
( "chem::EntityNameSetBase_O::getMonomerNames" "getMonomerNames" "/home/meister/Dev/clasp/projects/cando/src/chem/entityNameSet.cc:316:5")
( "chem::EntityNameSetBase_O::getMonomerNamesAsString" "getMonomerNamesAsString" "/home/meister/Dev/clasp/projects/cando/src/chem/entityNameSet.cc:323:5")
( "chem::EntityNameSetBase_O::getOnlyMonomerName" "getOnlyMonomerName" "/home/meister/Dev/clasp/projects/cando/src/chem/entityNameSet.cc:331:5")
( "chem::EntityNameSetBase_O::setMonomerNameOrPdb" "setMonomerNameOrPdb" "/home/meister/Dev/clasp/projects/cando/src/chem/entityNameSet.cc:345:5")
( "chem::EntityNameSetBase_O::recognizesNameOrPdb" "recognizesNameOrPdb" "/home/meister/Dev/clasp/projects/cando/src/chem/entityNameSet.cc:385:5")
( "chem::EntityNameSetBase_O::getUnrecognizedMonomerNamesOrdered" "getUnrecognizedMonomerNamesOrdered" "/home/meister/Dev/clasp/projects/cando/src/chem/entityNameSet.cc:407:5")
( "chem::EntityNameSetBase_O::hasInterestingAtomAlias" "hasInterestingAtomAlias" "/home/meister/Dev/clasp/projects/cando/src/chem/entityNameSet.cc:428:5")
( "chem::EntityNameSetBase_O::getMonomerNamesOrdered" "getMonomerNamesOrdered" "/home/meister/Dev/clasp/projects/cando/src/chem/entityNameSet.cc:435:5")
( "chem::EntityNameSetWithCap_O::addGroupName" "addGroupName" "/home/meister/Dev/clasp/projects/cando/src/chem/entityNameSet.cc:562:5")
( "core::BitVector_O::isZero" "core:isZero" "/home/meister/Dev/clasp/include/clasp/core/bitVector.h:90:3")
( "core::SmallMultimap_O::size" "small_multimap_size" "/home/meister/Dev/clasp/include/clasp/core/smallMultimap.h:59:3")
( "core::SingleDispatchGenericFunction_O::methods" "SingleDispatchGenericFunction-methods" "/home/meister/Dev/clasp/include/clasp/core/singleDispatchGenericFunction.h:90:3")
( "core::LambdaListHandler_O::requiredLexicalArgumentsOnlyP" "lambdaListHandlerRequiredLexicalArgumentsOnlyP" "/home/meister/Dev/clasp/include/clasp/core/lambdaListHandler.h:213:3")
( "core::LambdaListHandler_O::numberOfRequiredArguments" "numberOfRequiredArguments" "/home/meister/Dev/clasp/include/clasp/core/lambdaListHandler.h:215:3")
( "core::LambdaListHandler_O::numberOfOptionalArguments" "numberOfOptionalArguments" "/home/meister/Dev/clasp/include/clasp/core/lambdaListHandler.h:216:3")
( "core::LambdaListHandler_O::numberOfRestArguments" "numberOfRestArguments" "/home/meister/Dev/clasp/include/clasp/core/lambdaListHandler.h:217:3")
( "core::LambdaListHandler_O::numberOfKeyArguments" "numberOfKeyArguments" "/home/meister/Dev/clasp/include/clasp/core/lambdaListHandler.h:219:3")
( "core::LambdaListHandler_O::numberOfAuxArguments" "numberOfAuxArguments" "/home/meister/Dev/clasp/include/clasp/core/lambdaListHandler.h:220:3")
( "core::LambdaListHandler_O::allowOtherKeys" "allowOtherKeys" "/home/meister/Dev/clasp/include/clasp/core/lambdaListHandler.h:221:3")
( "core::LambdaListHandler_O::numberOfLexicalVariables" "numberOfLexicalVariables" "/home/meister/Dev/clasp/include/clasp/core/lambdaListHandler.h:226:3")
( "core::LambdaListHandler_O::classifiedSymbols" "classifiedSymbols" "/home/meister/Dev/clasp/include/clasp/core/lambdaListHandler.h:229:3")
( "core::RegexMatch_O::prefix" "regex-match-prefix" "/home/meister/Dev/clasp/include/clasp/core/regex.h:63:3")
( "core::RegexMatch_O::suffix" "regex-match-suffix" "/home/meister/Dev/clasp/include/clasp/core/regex.h:66:3")
( "core::InvocationHistoryFrameIterator_O::isValid" "frameIteratorIsValid" "/home/meister/Dev/clasp/include/clasp/core/primitives.h:193:3")
( "core::SingleDispatchMethod_O::singleDispatchMethodName" "singleDispatchMethodName" "/home/meister/Dev/clasp/include/clasp/core/singleDispatchMethod.h:77:3")
( "core::SingleDispatchMethod_O::singleDispatchMethodReceiverClass" "singleDispatchMethodReceiverClass" "/home/meister/Dev/clasp/include/clasp/core/singleDispatchMethod.h:78:3")
( "core::SingleDispatchMethod_O::singleDispatchMethodCode" "singleDispatchMethodCode" "/home/meister/Dev/clasp/include/clasp/core/singleDispatchMethod.h:79:3")
( "core::SingleDispatchMethod_O::singleDispatchMethodLambdaListHandler" "singleDispatchMethodLambdaListHandler" "/home/meister/Dev/clasp/include/clasp/core/singleDispatchMethod.h:80:3")
( "core::SingleDispatchMethod_O::singleDispatchMethodDeclares" "singleDispatchMethodDeclares" "/home/meister/Dev/clasp/include/clasp/core/singleDispatchMethod.h:81:3")
( "core::SingleDispatchMethod_O::singleDispatchMethodDocstring" "singleDispatchMethodDocstring" "/home/meister/Dev/clasp/include/clasp/core/singleDispatchMethod.h:82:3")
( "core::WrappedPointer_O::validp" "validp" "/home/meister/Dev/clasp/include/clasp/core/wrappedPointer.h:53:3")
( "core::ExternalObject_O::isUndefined" "isUndefined" "/home/meister/Dev/clasp/include/clasp/core/externalObject.h:70:3")
( "llvmo::EngineBuilder_O::error_string" "error_string" "/home/meister/Dev/clasp/include/clasp/llvmo/llvmoExpose.h:2102:3")
( "llvmo::IRBuilderBase_O::CurrentDebugLocation" "CurrentDebugLocation" "/home/meister/Dev/clasp/include/clasp/llvmo/llvmoExpose.h:2327:3")
( "llvmo::NamedMDNode_O::addOperand" "addOperand" "/home/meister/Dev/clasp/include/clasp/llvmo/llvmoExpose.h:3574:3")
( "llvmo::DebugLoc_O::getLine" "getLine" "/home/meister/Dev/clasp/include/clasp/llvmo/debugLoc.h:59:3")
( "llvmo::DebugLoc_O::getCol" "getCol" "/home/meister/Dev/clasp/include/clasp/llvmo/debugLoc.h:60:3")
( "adapt::IterateCons_O::init" "init" "/home/meister/Dev/clasp/projects/cando/include/cando/adapt/iterateCons.h:41:5")
( "adapt::ObjectSet_O::contains" "contains" "/home/meister/Dev/clasp/projects/cando/include/cando/adapt/objectSet.h:59:3")
( "adapt::ObjectSet_O::insert" "insert" "/home/meister/Dev/clasp/projects/cando/include/cando/adapt/objectSet.h:60:3")
( "adapt::ObjectSet_O::size" "size" "/home/meister/Dev/clasp/projects/cando/include/cando/adapt/objectSet.h:62:3")
( "chem::AtomId_O::asString" "asString" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/atomId.h:84:2")
( "chem::CDFragment_O::getConstitutionName" "getConstitutionName" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/chemdraw.h:159:5")
( "chem::CDFragment_O::getMolecule" "getMolecule" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/chemdraw.h:178:1")
( "chem::ChemDraw_O::allFragmentsAsCons" "allFragmentsAsCons" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/chemdraw.h:281:2")
( "chem::RestrainedPiBond_O::getConfiguration" "getConfiguration" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/complexRestraints.h:137:5")
( "chem::RestrainedPiBond_O::setConfiguration" "setConfiguration" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/complexRestraints.h:138:5")
( "chem::RestrainedPiBond_O::getPiAtomX" "getPiAtomX" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/complexRestraints.h:140:5")
( "chem::RestrainedPiBond_O::setPiAtomX" "setPiAtomX" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/complexRestraints.h:141:5")
( "chem::RestrainedPiBond_O::getPiAtomY" "getPiAtomY" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/complexRestraints.h:142:5")
( "chem::RestrainedPiBond_O::setPiAtomY" "setPiAtomY" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/complexRestraints.h:143:5")
( "geom::CoordinateArray_O::size" "size" "/home/meister/Dev/clasp/projects/cando/include/cando/geom/coordinateArray.h:94:5")
( "geom::CoordinateArray_O::append" "coordinate-array-append" "/home/meister/Dev/clasp/projects/cando/include/cando/geom/coordinateArray.h:101:5")
( "geom::CoordinateArrayWithHash_O::getHash" "coordinate-array-with-hash-gethash" "/home/meister/Dev/clasp/projects/cando/include/cando/geom/coordinateArray.h:145:5")
( "geom::CoordinateArrayWithHash_O::setHash" "coordinate-array-with-hash-setHash" "/home/meister/Dev/clasp/projects/cando/include/cando/geom/coordinateArray.h:146:5")
( "chem::ConformationExplorerEntryStage_O::getFinalCoordinates" "getFinalCoordinates" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/conformationExplorer.h:66:9")
( "chem::ConformationExplorerEntryStage_O::getEnergyKCal" "getEnergyKCal" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/conformationExplorer.h:69:2")
( "chem::ConformationExplorerEntryStage_O::setEnergyKCal" "setEnergyKCal" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/conformationExplorer.h:70:2")
( "chem::ConformationExplorerEntryStage_O::getExternalInterfaceName" "getExternalInterfaceName" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/conformationExplorer.h:72:2")
( "chem::ConformationExplorerEntryStage_O::setExternalInterfaceName" "setExternalInterfaceName" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/conformationExplorer.h:73:2")
( "chem::ConformationExplorerEntryStage_O::getModel" "getModel" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/conformationExplorer.h:75:2")
( "chem::ConformationExplorerEntryStage_O::setModel" "setModel" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/conformationExplorer.h:76:2")
( "chem::ConformationExplorerEntryStage_O::getBasedOnStageName" "getBasedOnStageName" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/conformationExplorer.h:85:2")
( "chem::ConformationExplorerEntryStage_O::setBasedOnStageName" "setBasedOnStageName" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/conformationExplorer.h:86:2")
( "chem::ConformationExplorerEntryStage_O::getStageName" "getStageName" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/conformationExplorer.h:88:2")
( "chem::ConformationExplorerEntryStage_O::setStageName" "setStageName" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/conformationExplorer.h:89:2")
( "chem::ConformationExplorerEntryStage_O::isComplete" "isComplete" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/conformationExplorer.h:91:2")
( "chem::ConformationExplorerEntryStage_O::setComplete" "setComplete" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/conformationExplorer.h:92:2")
( "chem::ConformationExplorerEntryStage_O::getBinder" "getBinder" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/conformationExplorer.h:95:2")
( "chem::ConformationExplorerEntry_O::getConformationExplorer" "getConformationExplorer" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/conformationExplorer.h:158:2")
( "chem::ConformationExplorerEntry_O::hasSelectedStage" "hasSelectedStage" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/conformationExplorer.h:168:2")
( "chem::ConformationExplorerEntry_O::getUniqueEntryIndex" "getUniqueEntryIndex" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/conformationExplorer.h:176:2")
( "chem::ConformationExplorer_O::getBinder" "getBinder" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/conformationExplorer.h:264:2")
( "chem::ConformationExplorer_O::getMatter" "getMatter" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/conformationExplorer.h:272:2")
( "chem::ConformationExplorer_O::numberOfEntries" "numberOfEntries" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/conformationExplorer.h:331:2")
( "chem::ConformationExplorerMatch_O::getMatches" "getMatches" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/conformationExplorer.h:391:2")
( "chem::ConformationExplorerMatch_O::getClosestMatchRms" "getClosestMatchRms" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/conformationExplorer.h:394:2")
( "chem::ConformationExplorerMatch_O::getClosestMatchIndex" "getClosestMatchIndex" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/conformationExplorer.h:396:2")
( "chem::Constitution_O::constitutionName" "constitutionName" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/constitution.h:165:6")
( "chem::Constitution_O::setConstitutionName" "setConstitutionName" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/constitution.h:166:6")
( "chem::Constitution_O::getMetaConstitutionName" "getMetaConstitutionName" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/constitution.h:168:6")
( "chem::Constitution_O::setMetaConstitutionName" "setMetaConstitutionName" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/constitution.h:169:6")
( "chem::Constitution_O::getConstitutionAtoms" "getConstitutionAtoms" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/constitution.h:178:6")
( "chem::Constitution_O::setComment" "setComment" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/constitution.h:198:6")
( "chem::Constitution_O::getComment" "getComment" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/constitution.h:199:6")
( "chem::Constitution_O::hasPlugNamed" "hasPlugNamed" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/constitution.h:203:6")
( "chem::Constitution_O::getPlugNamed" "getPlugNamed" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/constitution.h:204:6")
( "chem::ConstitutionAtom_O::atomName" "atomName" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/constitutionAtoms.h:75:2")
( "chem::ConstitutionAtoms_O::setNetCharge" "setNetCharge" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/constitutionAtoms.h:147:2")
( "chem::CoordinateSystem_O::setOrigin" "setOrigin" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/coordSys.h:49:2")
( "chem::CoordinateSystem_O::getOrigin" "getOrigin" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/coordSys.h:50:2")
( "chem::CoordinateSystem_O::getX" "getX" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/coordSys.h:51:2")
( "chem::CoordinateSystem_O::getY" "getY" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/coordSys.h:52:2")
( "chem::CoordinateSystem_O::getZ" "getZ" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/coordSys.h:53:2")
( "chem::Coupling_O::isSelected" "isSelected" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/coupling.h:84:2")
( "chem::Coupling_O::setSelected" "setSelected" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/coupling.h:85:2")
( "chem::Coupling_O::getHasError" "getHasError" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/coupling.h:88:2")
( "chem::Coupling_O::throwIfBadConnections" "throwIfBadConnections" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/coupling.h:91:9")
( "chem::Coupling_O::checkForErrors" "Coupling-checkForErrors" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/coupling.h:92:9")
( "chem::Coupling_O::doCoupling" "doCoupling" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/coupling.h:96:9")
( "chem::DirectionalCoupling_O::getName" "getName" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/coupling.h:176:2")
( "chem::ForceField_O::getTypes" "getTypes" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/forceField.h:115:2")
( "chem::ForceField_O::getStretchDb" "getStretchDb" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/forceField.h:117:2")
( "chem::ForceField_O::getAngleDb" "getAngleDb" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/forceField.h:118:2")
( "chem::ForceField_O::getItorDb" "getItorDb" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/forceField.h:119:2")
( "chem::ForceField_O::getPtorDb" "getPtorDb" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/forceField.h:120:2")
( "chem::ForceField_O::getNonbondDb" "getNonbondDb" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/forceField.h:121:2")
( "chem::ForceField_O::getVdwDb" "getVdwDb" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/forceField.h:122:2")
( "chem::FrameRecognizer_O::getSmarts" "getSmarts" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/frameRecognizer.h:65:5")
( "chem::Minimizer_O::getEnergyFunction" "getEnergyFunction" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/minimizer.h:249:2")
( "chem::Minimizer_O::statusAsInt" "status" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/minimizer.h:255:2")
( "chem::Minimizer_O::statusMessage" "statusMessage" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/minimizer.h:256:2")
( "chem::Minimizer_O::getIteration" "getIteration" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/minimizer.h:258:2")
( "chem::Minimizer_O::getRMSForce" "getRMSForce" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/minimizer.h:262:2")
( "chem::Minimizer_O::setMaximumNumberOfSteepestDescentSteps" "setMaximumNumberOfSteepestDescentSteps" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/minimizer.h:270:2")
( "chem::Minimizer_O::setMaximumNumberOfConjugateGradientSteps" "setMaximumNumberOfConjugateGradientSteps" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/minimizer.h:271:2")
( "chem::Minimizer_O::setMaximumNumberOfTruncatedNewtonSteps" "setMaximumNumberOfTruncatedNewtonSteps" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/minimizer.h:272:2")
( "chem::Minimizer_O::setSteepestDescentTolerance" "setSteepestDescentTolerance" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/minimizer.h:273:2")
( "chem::Minimizer_O::setConjugateGradientTolerance" "setConjugateGradientTolerance" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/minimizer.h:274:2")
( "chem::Minimizer_O::setTruncatedNewtonTolerance" "setTruncatedNewtonTolerance" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/minimizer.h:275:2")
( "chem::MonomerContext_O::setFocus" "setFocus" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/monomerContext.h:87:2")
( "chem::MonomerContext_O::getFocus" "getFocus" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/monomerContext.h:98:2")
( "chem::MonomerCoordinates_O::setComment" "setComment" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/monomerCoordinates.h:58:2")
( "chem::MonomerCoordinates_O::getComment" "getComment" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/monomerCoordinates.h:59:2")
( "chem::MonomerCoordinates_O::getContext" "getContext" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/monomerCoordinates.h:62:2")
( "chem::Oligomer_O::setName" "setName" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/oligomer.h:145:5")
( "chem::Oligomer_O::getName" "getName" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/oligomer.h:146:5")
( "chem::Oligomer_O::getVerbose" "getVerbose" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/oligomer.h:149:5")
( "chem::Oligomer_O::getHasError" "getHasError" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/oligomer.h:153:5")
( "chem::Mate_O::setCap" "setCap" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/plug.h:59:5")
( "chem::Mate_O::getCap" "getCap" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/plug.h:60:5")
( "chem::Plug_O::setName" "setName" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/plug.h:131:5")
( "chem::Plug_O::getName" "getName" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/plug.h:132:5")
( "chem::Plug_O::getIsIn" "getIsIn" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/plug.h:134:5")
( "chem::Plug_O::getIsRingClosing" "getIsRingClosing" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/plug.h:135:5")
( "chem::Plug_O::getPlug" "getPlug" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/plug.h:137:5")
( "chem::Plug_O::matesAsCons" "matesAsCons" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/plug.h:150:5")
( "chem::PlugWithMates_O::getB0" "getB0" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/plug.h:192:5")
( "chem::PlugWithMates_O::getB1" "getB1" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/plug.h:195:5")
( "chem::PlugWithMates_O::hasB1" "hasB1" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/plug.h:196:5")
( "chem::OutPlug_O::hasStubPivotAtom" "hasStubPivotAtom" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/plug.h:243:5")
( "chem::OutPlug_O::getStubPivotAtom" "getStubPivotAtom" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/plug.h:244:2")
( "chem::InPlug_O::rootAtomName" "rootAtomName" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/plug.h:271:5")
( "chem::JumpPlug_O::rootAtomName" "rootAtomName" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/plug.h:310:5")
( "chem::ReadAmberParameters_O::getTypeRules" "getTypeRules" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/readAmberParameters.h:53:5")
( "chem::RepresentedEntityNameSet_O::testRepresentedEntityNameSet" "testRepresentedEntityNameSet" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/representedEntityNameSet.h:66:2")
( "geom::OVector3_O::setAll3" "setAll3" "/home/meister/Dev/clasp/projects/cando/include/cando/geom/ovector3.h:45:2")
( "geom::OVector3_O::getX" "x" "/home/meister/Dev/clasp/projects/cando/include/cando/geom/ovector3.h:46:2")
( "geom::OVector3_O::getY" "y" "/home/meister/Dev/clasp/projects/cando/include/cando/geom/ovector3.h:47:2")
( "geom::OVector3_O::getZ" "z" "/home/meister/Dev/clasp/projects/cando/include/cando/geom/ovector3.h:48:2")
( "chem::Restraint_O::isActive" "isActive" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/restraint.h:56:3")
( "chem::Restraint_O::setActive" "setActive" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/restraint.h:57:3")
( "chem::RestraintAnchor_O::setWeight" "setWeight" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/restraint.h:90:2")
( "chem::RestraintAnchor_O::getWeight" "restraint-anchor-getWeight" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/restraint.h:91:2")
( "chem::RestraintAnchor_O::setAnchorPos" "setAnchorPos" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/restraint.h:93:2")
( "chem::RestraintAnchor_O::setAtom" "setAtom" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/restraint.h:98:2")
( "chem::RestraintList_O::addRestraint" "addRestraint" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/restraint.h:364:2")
( "chem::RestraintList_O::numberOfRestraints" "numberOfRestraints" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/restraint.h:366:9")
( "chem::SpanningLoop_O::advance" "advance" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/spanningLoop.h:92:2")
( "chem::SpecificContextSet_O::size" "size" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/specificContext.h:107:2")
( "chem::StereoConfiguration_O::getAtomName" "getAtomName" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/stereochemistry.h:68:6")
( "chem::StereoConfiguration_O::setAtomName" "setAtomName" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/stereochemistry.h:69:6")
( "chem::StereoConfiguration_O::getConfiguration" "getConfiguration" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/stereochemistry.h:70:13")
( "chem::StereoConfiguration_O::setConfiguration" "setConfiguration" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/stereochemistry.h:71:6")
( "chem::Stereoisomer_O::getName" "getName" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/stereochemistry.h:122:6")
( "chem::Stereoisomer_O::setName" "setName" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/stereochemistry.h:123:6")
( "chem::Stereoisomer_O::getPdb" "getPdb" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/stereochemistry.h:124:6")
( "chem::Stereoisomer_O::setPdb" "setPdb" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/stereochemistry.h:125:6")
( "chem::StereoInformation_O::stereoisomersAsCons" "stereoisomersAsCons" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/stereochemistry.h:173:6")
( "chem::StereoisomerAtom_O::atomName" "atomName" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/stereoisomerAtoms.h:49:2")
( "chem::StereoisomerAtom_O::getCharge" "getCharge" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/stereoisomerAtoms.h:52:2")
( "chem::StereoisomerAtom_O::setCharge" "setCharge" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/stereoisomerAtoms.h:53:2")
( "chem::StereoisomerAtom_O::getAtomType" "getAtomType" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/stereoisomerAtoms.h:54:9")
( "chem::StereoisomerAtom_O::setAtomType" "setAtomType" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/stereoisomerAtoms.h:55:2")
( "chem::Topology_O::suppressTrainers" "suppressTrainers" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/topology.h:135:5")
( "chem::Topology_O::getName" "getName" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/topology.h:151:5")
( "chem::Topology_O::numberOfPlugs" "numberOfPlugs" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/topology.h:161:5")
( "chem::Topology_O::getResidueNetCharge" "getResidueNetCharge" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/topology.h:172:5")
( "chem::Trajectory_O::getMatter" "getMatter" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/trajectory.h:103:2")
( "chem::TwisterDriver_O::numberOfTwisters" "numberOfTwisters" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/twister.h:115:5")
( "chem::ZMatrixInternal_O::getValue" "getValue" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/zMatrix.h:59:2")
( "chem::ZMatrixBondInternal_O::getBondAtomIndex" "getBondAtomIndex" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/zMatrix.h:86:2")
( "chem::ZMatrixAngleInternal_O::getBondAtomIndex" "getBondAtomIndex" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/zMatrix.h:132:2")
( "chem::ZMatrixAngleInternal_O::getAngleAtomIndex" "getAngleAtomIndex" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/zMatrix.h:133:2")
( "chem::ZMatrixDihedralInternal_O::getBondAtomIndex" "getBondAtomIndex" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/zMatrix.h:184:2")
( "chem::ZMatrixDihedralInternal_O::getAngleAtomIndex" "getAngleAtomIndex" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/zMatrix.h:185:2")
( "chem::ZMatrixDihedralInternal_O::getDihedralAtomIndex" "getDihedralAtomIndex" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/zMatrix.h:186:2")
( "chem::ZMatrixEntry_O::getAtom" "getAtom" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/zMatrix.h:232:2")
( "chem::ZMatrixEntry_O::getTargetAtomZMatrixName" "getTargetAtomZMatrixName" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/zMatrix.h:233:2")
( "chem::ZMatrixEntry_O::hasBond" "hasBond" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/zMatrix.h:235:2")
( "chem::ZMatrixEntry_O::getBond" "getBond" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/zMatrix.h:236:2")
( "chem::ZMatrixEntry_O::hasAngle" "hasAngle" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/zMatrix.h:237:2")
( "chem::ZMatrixEntry_O::getAngle" "getAngle" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/zMatrix.h:238:2")
( "chem::ZMatrixEntry_O::hasDihedral" "hasDihedral" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/zMatrix.h:239:2")
( "chem::ZMatrixEntry_O::getDihedral" "getDihedral" "/home/meister/Dev/clasp/projects/cando/include/cando/chem/zMatrix.h:240:2")
( "geom::OMatrix_O::extract3x3" "extract3x3" "/home/meister/Dev/clasp/projects/cando/include/cando/geom/omatrix.h:47:5")
( "geom::OMatrix_O::transposed3x3" "transposed3x3" "/home/meister/Dev/clasp/projects/cando/include/cando/geom/omatrix.h:48:5")
( "geom::OMatrix_O::atRowColGet" "atRowColGet" "/home/meister/Dev/clasp/projects/cando/include/cando/geom/omatrix.h:50:5")
( "geom::OMatrix_O::atRowColPut" "atRowColPut" "/home/meister/Dev/clasp/projects/cando/include/cando/geom/omatrix.h:51:5")
( "geom::OMatrix_O::is3x3Orthogonal" "is3x3Orthogonal" "/home/meister/Dev/clasp/projects/cando/include/cando/geom/omatrix.h:57:5")
( "units::Quantity_O::rawValue" "rawValue" "/home/meister/Dev/clasp/projects/cando/include/cando/units/quantity.h:89:2")
( "units::Quantity_O::rawUnit" "rawUnit" "/home/meister/Dev/clasp/projects/cando/include/cando/units/quantity.h:92:2")
( "chem::RepresentedEntityNameSet_O::getRepresentative" "getRepresentative" "/home/meister/Dev/clasp/projects/cando/src/chem/representedEntityNameSet.cc:56:5")
( "chem::RepresentedEntityNameSet_O::setRepresentative" "setRepresentative" "/home/meister/Dev/clasp/projects/cando/src/chem/representedEntityNameSet.cc:61:5")
( "chem::RepresentedEntityNameSet_O::hasRepresentative" "hasRepresentative" "/home/meister/Dev/clasp/projects/cando/src/chem/representedEntityNameSet.cc:66:5")
( "core::MultiStringBuffer_O::addString" "addString" "/home/meister/Dev/clasp/src/core/multiStringBuffer.cc:201:1")
( "core::MultiStringBuffer_O::getString" "getString" "/home/meister/Dev/clasp/src/core/multiStringBuffer.cc:217:1")
( "core::MultiStringBuffer_O::dump" "dump" "/home/meister/Dev/clasp/src/core/multiStringBuffer.cc:233:1")
( "chem::CipPrioritizer_O::assignCahnIngoldPrelogPriorityToAtomsRelativePriority" "assignCahnIngoldPrelogPriorityToAtomsRelativePriority" "/home/meister/Dev/clasp/projects/cando/src/chem/cipPrioritizer.cc:164:1")
( "chem::CipPrioritizer_O::defineStereochemicalConfigurationsForAllAtoms" "defineStereochemicalConfigurationsForAllAtoms" "/home/meister/Dev/clasp/projects/cando/src/chem/cipPrioritizer.cc:486:1")
( "chem::AtomTable_O::addAtomInfo" "addAtomInfo" "/home/meister/Dev/clasp/projects/cando/src/chem/energyAtomTable.cc:127:5")
( "chem::StereoConfiguration_O::getMoeConfiguration" "getMoeConfiguration" "/home/meister/Dev/clasp/projects/cando/src/chem/stereochemistry.cc:34:1")
( "chem::Stereoisomer_O::getConfigurationForCenter" "getConfigurationForCenter" "/home/meister/Dev/clasp/projects/cando/src/chem/stereochemistry.cc:218:1")
( "chem::StereoInformation_O::validate" "validate" "/home/meister/Dev/clasp/projects/cando/src/chem/stereochemistry.cc:323:1")
( "chem::FFTypesDb_O::assignTypes" "assignTypes" "/home/meister/Dev/clasp/projects/cando/src/chem/ffTypesDb.cc:38:1")
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( "chem::AtomIdToAtomMap_O::lookupAtom" "lookup-atom" "/home/meister/Dev/clasp/projects/cando/src/chem/atomIdMap.cc:24:5")
( "core::Function_O::cleavir_ast" "core:cleavir_ast" "/home/meister/Dev/clasp/src/core/executables.cc:159:1")
( "core::Function_O::setf_cleavir_ast" "core:setf_cleavir_ast" "/home/meister/Dev/clasp/src/core/executables.cc:164:1")
( "core::Function_O::functionLambdaListHandler" "core:functionLambdaListHandler" "/home/meister/Dev/clasp/src/core/executables.cc:169:1")
( "core::Function_O::macroP" "core:macrop" "/home/meister/Dev/clasp/src/core/executables.cc:173:1")
( "core::Function_O::setKind" "core:setFunctionKind" "/home/meister/Dev/clasp/src/core/executables.cc:178:1")
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( "core::Function_O::docstring" "core:function_docstring" "/home/meister/Dev/clasp/src/core/executables.cc:187:1")
( "core::Function_O::declares" "core:function_declares" "/home/meister/Dev/clasp/src/core/executables.cc:192:1")
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( "core::Function_O::functionSourcePos" "core:functionSourcePos" "/home/meister/Dev/clasp/src/core/executables.cc:206:1")
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( "chem::Minimizer_O::throwMinimizerStuck" "throwMinimizerStuck" "/home/meister/Dev/clasp/projects/cando/src/chem/minimizer.cc:837:5")
( "chem::Minimizer_O::throwMinimizerError" "throwMinimizerError" "/home/meister/Dev/clasp/projects/cando/src/chem/minimizer.cc:843:5")
( "chem::Minimizer_O::useDefaultSettings" "useDefaultSettings" "/home/meister/Dev/clasp/projects/cando/src/chem/minimizer.cc:2126:5")
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( "chem::Minimizer_O::setEnergyFunction" "setEnergyFunction" "/home/meister/Dev/clasp/projects/cando/src/chem/minimizer.cc:2170:5")
( "chem::Minimizer_O::evaluateEnergyAndForceManyTimes" "evaluateEnergyAndForceManyTimes" "/home/meister/Dev/clasp/projects/cando/src/chem/minimizer.cc:2176:5")
( "chem::Minimizer_O::minimizeSteepestDescent" "minimizeSteepestDescent" "/home/meister/Dev/clasp/projects/cando/src/chem/minimizer.cc:2191:5")
( "chem::Minimizer_O::minimizeConjugateGradient" "minimizeConjugateGradient" "/home/meister/Dev/clasp/projects/cando/src/chem/minimizer.cc:2238:5")
( "chem::Minimizer_O::resetAndMinimize" "resetAndMinimize" "/home/meister/Dev/clasp/projects/cando/src/chem/minimizer.cc:2289:5")
( "chem::Minimizer_O::minimize" "minimize" "/home/meister/Dev/clasp/projects/cando/src/chem/minimizer.cc:2296:5")
( "chem::Minimizer_O::writeIntermediateResultsToEnergyFunction" "writeIntermediateResultsToEnergyFunction" "/home/meister/Dev/clasp/projects/cando/src/chem/minimizer.cc:2357:1")
( "chem::Minimizer_O::configurationAsString" "configurationAsString" "/home/meister/Dev/clasp/projects/cando/src/chem/minimizer.cc:2382:5")
( "chem::Minimizer_O::restart" "restart" "/home/meister/Dev/clasp/projects/cando/src/chem/minimizer.cc:2398:5")
( "core::ForeignData_O::freeForeignObject" "freeForeignObject" "/home/meister/Dev/clasp/src/core/externalObject.cc:157:1")
( "core::SourceFileInfo_O::sourceDebugNamestring" "SourceFileInfo-sourceDebugNamestring" "/home/meister/Dev/clasp/src/core/sourceFileInfo.cc:336:1")
( "chem::FFNonbondDb_O::findTypeIndex" "findTypeIndex" "/home/meister/Dev/clasp/projects/cando/src/chem/ffNonbondDb.cc:265:1")
( "chem::FFNonbondDb_O::numberOfTypes" "numberOfTypes" "/home/meister/Dev/clasp/projects/cando/src/chem/ffNonbondDb.cc:299:1")
( "chem::DirectionalCoupling_O::throwIfBadConnections" "throwIfBadConnections" "/home/meister/Dev/clasp/projects/cando/src/chem/coupling.cc:193:1")
( "chem::DirectionalCoupling_O::getInMonomer" "getInMonomer" "/home/meister/Dev/clasp/projects/cando/src/chem/coupling.cc:262:1")
( "chem::DirectionalCoupling_O::getOutMonomer" "getOutMonomer" "/home/meister/Dev/clasp/projects/cando/src/chem/coupling.cc:277:1")
( "chem::DirectionalCoupling_O::getInMonomerPlugName" "getInMonomerPlugName" "/home/meister/Dev/clasp/projects/cando/src/chem/coupling.cc:296:5")
( "chem::DirectionalCoupling_O::getOutMonomerPlugName" "getOutMonomerPlugName" "/home/meister/Dev/clasp/projects/cando/src/chem/coupling.cc:305:5")
( "chem::DirectionalCoupling_O::setName" "setName" "/home/meister/Dev/clasp/projects/cando/src/chem/coupling.cc:343:5")
( "chem::DirectionalCoupling_O::setInMonomer" "setInMonomer" "/home/meister/Dev/clasp/projects/cando/src/chem/coupling.cc:375:1")
( "chem::DirectionalCoupling_O::setOutMonomer" "setOutMonomer" "/home/meister/Dev/clasp/projects/cando/src/chem/coupling.cc:381:1")
( "chem::DirectionalCoupling_O::getOtherSideMonomer" "getOtherSideMonomer" "/home/meister/Dev/clasp/projects/cando/src/chem/coupling.cc:403:1")
( "chem::RingCoupling_O::setMonomer1" "setMonomer1" "/home/meister/Dev/clasp/projects/cando/src/chem/coupling.cc:559:1")
( "chem::RingCoupling_O::getMonomer1" "getMonomer1" "/home/meister/Dev/clasp/projects/cando/src/chem/coupling.cc:564:1")
( "chem::RingCoupling_O::setMonomer2" "setMonomer2" "/home/meister/Dev/clasp/projects/cando/src/chem/coupling.cc:579:1")
( "chem::RingCoupling_O::getMonomer2" "getMonomer2" "/home/meister/Dev/clasp/projects/cando/src/chem/coupling.cc:584:1")
( "chem::RingCoupling_O::getOtherSideMonomer" "getOtherSideMonomer" "/home/meister/Dev/clasp/projects/cando/src/chem/coupling.cc:598:1")
( "chem::RingCoupling_O::getPlug1" "getPlug1" "/home/meister/Dev/clasp/projects/cando/src/chem/coupling.cc:685:1")
( "chem::RingCoupling_O::getPlug2" "getPlug2" "/home/meister/Dev/clasp/projects/cando/src/chem/coupling.cc:689:1")
( "chem::MonomerContext_O::addNeighbor" "addNeighbor" "/home/meister/Dev/clasp/projects/cando/src/chem/monomerContext.cc:86:5")
( "chem::MonomerContext_O::getKey" "getKey" "/home/meister/Dev/clasp/projects/cando/src/chem/monomerContext.cc:190:1")
( "chem::MonomerContext_O::getAllSpecificKeys" "getAllSpecificKeys" "/home/meister/Dev/clasp/projects/cando/src/chem/monomerContext.cc:206:5")
( "chem::MonomerContext_O::getAllSpecificContexts" "getAllSpecificContexts" "/home/meister/Dev/clasp/projects/cando/src/chem/monomerContext.cc:229:5")
( "chem::MonomerContext_O::recognizesMonomerAndEnvironment" "recognizesMonomerAndEnvironment" "/home/meister/Dev/clasp/projects/cando/src/chem/monomerContext.cc:311:5")
( "chem::MonomerContext_O::setFocusFromMonomer" "setFocusFromMonomer" "/home/meister/Dev/clasp/projects/cando/src/chem/monomerContext.cc:353:5")
( "chem::MonomerContext_O::getPlugNames" "getPlugNames" "/home/meister/Dev/clasp/projects/cando/src/chem/monomerContext.cc:364:5")
( "chem::MonomerContext_O::getNeighbor" "getNeighbor" "/home/meister/Dev/clasp/projects/cando/src/chem/monomerContext.cc:376:5")
( "chem::EnergyFunction_O::useDefaultSettings" "useDefaultSettings" "/home/meister/Dev/clasp/projects/cando/src/chem/energyFunction.cc:339:1")
( "chem::EnergyFunction_O::getNVectorSize" "getNVectorSize" "/home/meister/Dev/clasp/projects/cando/src/chem/energyFunction.cc:414:1")
( "chem::EnergyFunction_O::setOption" "setOption" "/home/meister/Dev/clasp/projects/cando/src/chem/energyFunction.cc:438:1")
( "chem::EnergyFunction_O::setOptions" "setOptions" "/home/meister/Dev/clasp/projects/cando/src/chem/energyFunction.cc:473:1")
( "chem::EnergyFunction_O::setupHessianPreconditioner" "setupHessianPreconditioner" "/home/meister/Dev/clasp/projects/cando/src/chem/energyFunction.cc:547:1")
( "chem::EnergyFunction_O::countTermsBeyondThreshold" "countTermsBeyondThreshold" "/home/meister/Dev/clasp/projects/cando/src/chem/energyFunction.cc:580:1")
( "chem::EnergyFunction_O::evaluateAll" "evaluateAll" "/home/meister/Dev/clasp/projects/cando/src/chem/energyFunction.cc:596:1")
( "chem::EnergyFunction_O::energyComponentsAsString" "energyComponentsAsString" "/home/meister/Dev/clasp/projects/cando/src/chem/energyFunction.cc:758:1")
( "chem::EnergyFunction_O::compareAnalyticalAndNumericalForceAndHessianTermByTermAtCurrentPosition" "compareAnalyticalAndNumericalForceAndHessianTermByTermAtCurrentPosition" "/home/meister/Dev/clasp/projects/cando/src/chem/energyFunction.cc:805:1")
( "chem::EnergyFunction_O::checkForBeyondThresholdInteractions" "checkForBeyondThresholdInteractions" "/home/meister/Dev/clasp/projects/cando/src/chem/energyFunction.cc:822:1")
( "chem::EnergyFunction_O::energyTermsEnabled" "energyTermsEnabled" "/home/meister/Dev/clasp/projects/cando/src/chem/energyFunction.cc:859:1")
( "chem::EnergyFunction_O::evaluateEnergy" "evaluateEnergy" "/home/meister/Dev/clasp/projects/cando/src/chem/energyFunction.cc:892:1")
( "chem::EnergyFunction_O::evaluateEnergyForce" "evaluateEnergyForce" "/home/meister/Dev/clasp/projects/cando/src/chem/energyFunction.cc:910:1")
( "chem::EnergyFunction_O::evaluateEnergyForceFullHessian" "evaluateEnergyForceFullHessian" "/home/meister/Dev/clasp/projects/cando/src/chem/energyFunction.cc:931:1")
( "chem::EnergyFunction_O::evaluateEnergyForceFullHessianForDebugging" "evaluateEnergyForceFullHessianForDebugging" "/home/meister/Dev/clasp/projects/cando/src/chem/energyFunction.cc:954:1")
( "chem::EnergyFunction_O::calculateNumericalDerivative" "calculateNumericalDerivative" "/home/meister/Dev/clasp/projects/cando/src/chem/energyFunction.cc:978:1")
( "chem::EnergyFunction_O::calculateNumericalSecondDerivative" "calculateNumericalSecondDerivative" "/home/meister/Dev/clasp/projects/cando/src/chem/energyFunction.cc:993:1")
( "chem::EnergyFunction_O::evaluateNumericalForce" "evaluateNumericalForce" "/home/meister/Dev/clasp/projects/cando/src/chem/energyFunction.cc:1043:1")
( "chem::EnergyFunction_O::evaluateNumericalHessian" "evaluateNumericalHessian" "/home/meister/Dev/clasp/projects/cando/src/chem/energyFunction.cc:1057:1")
( "chem::EnergyFunction_O::dumpTerms" "dumpTerms" "/home/meister/Dev/clasp/projects/cando/src/chem/energyFunction.cc:1165:1")
( "chem::EnergyFunction_O::defineForMatter" "defineForMatter" "/home/meister/Dev/clasp/projects/cando/src/chem/energyFunction.cc:1339:1")
( "chem::EnergyFunction_O::addTermsForListOfRestraints" "addTermsForListOfRestraints" "/home/meister/Dev/clasp/projects/cando/src/chem/energyFunction.cc:1821:1")
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( "chem::EnergyFunction_O::calculateEnergy" "calculateEnergy" "/home/meister/Dev/clasp/projects/cando/src/chem/energyFunction.cc:1893:1")
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( "chem::CoordinateSystem_O::matrixFromCanonical" "matrixFromCanonical" "/home/meister/Dev/clasp/projects/cando/src/chem/coordSys.cc:484:1")
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( "chem::CoordinateSystem_O::canonical" "canonical" "/home/meister/Dev/clasp/projects/cando/src/chem/coordSys.cc:550:1")
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( "chem::CoordinateSystem_O::defineForAtomVectors" "defineForAtomVectors" "/home/meister/Dev/clasp/projects/cando/src/chem/coordSys.cc:595:1")
( "chem::CoordinateSystem_O::defineForVectorsOriginXDirYDir" "defineForVectorsOriginXDirYDir" "/home/meister/Dev/clasp/projects/cando/src/chem/coordSys.cc:680:1")
( "chem::CoordinateSystem_O::defineForVectorsOriginXDirXYPlane" "defineForVectorsOriginXDirXYPlane" "/home/meister/Dev/clasp/projects/cando/src/chem/coordSys.cc:701:1")
( "chem::CoordinateSystem_O::defineForVectorsOriginZDirXZPlane" "defineForVectorsOriginZDirXZPlane" "/home/meister/Dev/clasp/projects/cando/src/chem/coordSys.cc:723:1")
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( "chem::CoordinateSystem_O::defineRandom" "defineRandom" "/home/meister/Dev/clasp/projects/cando/src/chem/coordSys.cc:762:1")
( "chem::CoordinateSystem_O::defineFromCoordinateSystem" "defineFromCoordinateSystem" "/home/meister/Dev/clasp/projects/cando/src/chem/coordSys.cc:791:1")
( "chem::CoordinateSystem_O::defineCanonical" "defineCanonical" "/home/meister/Dev/clasp/projects/cando/src/chem/coordSys.cc:800:1")
( "chem::CoordinateSystem_O::transformWithMatrix" "transformWithMatrix" "/home/meister/Dev/clasp/projects/cando/src/chem/coordSys.cc:836:1")
( "chem::CoordinateSystem_O::dump" "dump" "/home/meister/Dev/clasp/projects/cando/src/chem/coordSys.cc:902:1")
( "chem::CoordinateSystem_O::copy" "copy" "/home/meister/Dev/clasp/projects/cando/src/chem/coordSys.cc:921:1")
( "chem::CoordinateSystem_O::sameAs" "sameAs" "/home/meister/Dev/clasp/projects/cando/src/chem/coordSys.cc:928:1")
( "core::Instance_O::className" "core:nameOfClass" "/home/meister/Dev/clasp/src/core/metaClass.cc:176:1")
( "core::Instance_O::directSuperclasses" "core:direct-superclasses" "/home/meister/Dev/clasp/src/core/metaClass.cc:444:1")
( "chem::MonomerPack_O::removeMonomerName" "removeMonomerName" "/home/meister/Dev/clasp/projects/cando/src/chem/monomerPack.cc:334:1")
( "chem::Oligomer_O::hasLastMultiMonomerChanged" "hasLastMultiMonomerChanged" "/home/meister/Dev/clasp/projects/cando/src/chem/oligomer.cc:98:1")
( "chem::Oligomer_O::getLastMultiMonomerChanged" "getLastMultiMonomerChanged" "/home/meister/Dev/clasp/projects/cando/src/chem/oligomer.cc:103:1")
( "chem::Oligomer_O::empty" "empty" "/home/meister/Dev/clasp/projects/cando/src/chem/oligomer.cc:118:1")
( "chem::Oligomer_O::monomersAsCons" "monomersAsCons" "/home/meister/Dev/clasp/projects/cando/src/chem/oligomer.cc:146:1")
( "chem::Oligomer_O::addMonomer" "addMonomer" "/home/meister/Dev/clasp/projects/cando/src/chem/oligomer.cc:215:1")
( "chem::Oligomer_O::hasMonomerWithId" "hasMonomerWithId" "/home/meister/Dev/clasp/projects/cando/src/chem/oligomer.cc:234:1")
( "chem::Oligomer_O::getMonomerWithId" "getMonomerWithId" "/home/meister/Dev/clasp/projects/cando/src/chem/oligomer.cc:245:1")
( "chem::Oligomer_O::removeMonomer" "removeMonomer" "/home/meister/Dev/clasp/projects/cando/src/chem/oligomer.cc:260:1")
( "chem::Oligomer_O::removeCoupling" "Oligomer-removeCoupling" "/home/meister/Dev/clasp/projects/cando/src/chem/oligomer.cc:277:1")
( "chem::Oligomer_O::checkForErrors" "checkForErrors" "/home/meister/Dev/clasp/projects/cando/src/chem/oligomer.cc:291:1")
( "chem::Oligomer_O::updateMultiMonomers" "updateMultiMonomers" "/home/meister/Dev/clasp/projects/cando/src/chem/oligomer.cc:318:1")
( "chem::Oligomer_O::removeLeafMonomer" "removeLeafMonomer" "/home/meister/Dev/clasp/projects/cando/src/chem/oligomer.cc:360:1")
( "chem::Oligomer_O::addCoupling" "Oligomer-addCoupling" "/home/meister/Dev/clasp/projects/cando/src/chem/oligomer.cc:388:1")
( "chem::Oligomer_O::rootMonomer" "rootMonomer" "/home/meister/Dev/clasp/projects/cando/src/chem/oligomer.cc:399:1")
( "chem::Oligomer_O::throwIfBadConnections" "throwIfBadConnections" "/home/meister/Dev/clasp/projects/cando/src/chem/oligomer.cc:428:1")
( "chem::Oligomer_O::setVerbose" "setVerbose" "/home/meister/Dev/clasp/projects/cando/src/chem/oligomer.cc:450:1")
( "chem::Oligomer_O::couple" "couple" "/home/meister/Dev/clasp/projects/cando/src/chem/oligomer.cc:466:1")
( "chem::Oligomer_O::ringCouple" "ringCouple" "/home/meister/Dev/clasp/projects/cando/src/chem/oligomer.cc:508:1")
( "chem::Oligomer_O::getMolecule" "getMolecule" "/home/meister/Dev/clasp/projects/cando/src/chem/oligomer.cc:561:1")
( "chem::Oligomer_O::getErrorMessage" "getErrorMessage" "/home/meister/Dev/clasp/projects/cando/src/chem/oligomer.cc:599:1")
( "chem::Oligomer_O::numberOfSequences" "numberOfSequences" "/home/meister/Dev/clasp/projects/cando/src/chem/oligomer.cc:718:1")
( "chem::Oligomer_O::getFirstMonomer" "getFirstMonomer" "/home/meister/Dev/clasp/projects/cando/src/chem/oligomer.cc:751:1")
( "chem::Oligomer_O::sequenceAsString" "sequenceAsString" "/home/meister/Dev/clasp/projects/cando/src/chem/oligomer.cc:802:1")
( "chem::Oligomer_O::sequenceAsFileName" "sequenceAsFileName" "/home/meister/Dev/clasp/projects/cando/src/chem/oligomer.cc:876:1")
( "chem::Oligomer_O::allSpecificMonomerContexts" "allSpecificMonomerContexts" "/home/meister/Dev/clasp/projects/cando/src/chem/oligomer.cc:888:1")
( "geom::OVector3_O::sub" "sub" "/home/meister/Dev/clasp/projects/cando/src/geom/ovector3.cc:83:5")
( "geom::OVector3_O::magnitude" "vector-magnitude" "/home/meister/Dev/clasp/projects/cando/src/geom/ovector3.cc:89:5")
( "geom::OVector3_O::crossProduct" "crossProduct" "/home/meister/Dev/clasp/projects/cando/src/geom/ovector3.cc:95:5")
( "geom::OVector3_O::dotProduct" "dotProduct" "/home/meister/Dev/clasp/projects/cando/src/geom/ovector3.cc:101:5")
( "geom::OVector3_O::add" "add" "/home/meister/Dev/clasp/projects/cando/src/geom/ovector3.cc:132:1")
( "geom::OVector3_O::timesScalar" "timesScalar" "/home/meister/Dev/clasp/projects/cando/src/geom/ovector3.cc:146:1")
( "geom::OVector3_O::normalized" "vector-normalized" "/home/meister/Dev/clasp/projects/cando/src/geom/ovector3.cc:153:1")
( "geom::OVector3_O::dihedral" "dihedral" "/home/meister/Dev/clasp/projects/cando/src/geom/ovector3.cc:158:1")
( "geom::OVector3_O::angle" "vector3-angle" "/home/meister/Dev/clasp/projects/cando/src/geom/ovector3.cc:163:1")
( "geom::OVector3_O::distance" "vector3-distance" "/home/meister/Dev/clasp/projects/cando/src/geom/ovector3.cc:168:1")
( "geom::OVector3_O::setUsingBond" "setUsingBond" "/home/meister/Dev/clasp/projects/cando/src/geom/ovector3.cc:173:1")
( "geom::OVector3_O::setUsingBondAngle" "setUsingBondAngle" "/home/meister/Dev/clasp/projects/cando/src/geom/ovector3.cc:178:1")
( "geom::OVector3_O::setUsingBondAngleDihedral" "setUsingBondAngleDihedral" "/home/meister/Dev/clasp/projects/cando/src/geom/ovector3.cc:184:1")
( "chem::Matter_O::hasContentWithName" "hasContentWithName" "/home/meister/Dev/clasp/projects/cando/src/chem/matter.cc:82:1")
( "chem::Matter_O::allRestraints" "allRestraints" "/home/meister/Dev/clasp/projects/cando/src/chem/matter.cc:106:1")
( "chem::Matter_O::clearRestraints" "clearRestraints" "/home/meister/Dev/clasp/projects/cando/src/chem/matter.cc:113:1")
( "chem::Matter_O::addRestraint" "addRestraint" "/home/meister/Dev/clasp/projects/cando/src/chem/matter.cc:120:1")
( "chem::Matter_O::propertiesAsString" "propertiesAsString" "/home/meister/Dev/clasp/projects/cando/src/chem/matter.cc:146:1")
( "chem::Matter_O::clearProperty" "clearProperty" "/home/meister/Dev/clasp/projects/cando/src/chem/matter.cc:189:1")
( "chem::Matter_O::setProperty" "setProperty" "/home/meister/Dev/clasp/projects/cando/src/chem/matter.cc:194:1")
( "chem::Matter_O::setPropertyTrue" "setPropertyTrue" "/home/meister/Dev/clasp/projects/cando/src/chem/matter.cc:199:1")
( "chem::Matter_O::getProperty" "Matter-getProperty" "/home/meister/Dev/clasp/projects/cando/src/chem/matter.cc:204:1")
( "chem::Matter_O::getPropertyOrDefault" "Matter-getPropertyOrDefault" "/home/meister/Dev/clasp/projects/cando/src/chem/matter.cc:215:1")
( "chem::Matter_O::hasProperty" "hasProperty" "/home/meister/Dev/clasp/projects/cando/src/chem/matter.cc:220:1")
( "chem::Matter_O::firstAtomWithName" "firstAtomWithName" "/home/meister/Dev/clasp/projects/cando/src/chem/matter.cc:227:1")
( "chem::Matter_O::calculateVirtualAtomPositions" "calculateVirtualAtomPositions" "/home/meister/Dev/clasp/projects/cando/src/chem/matter.cc:243:1")
( "chem::Matter_O::connectAllCloseAtoms" "connectAllCloseAtoms" "/home/meister/Dev/clasp/projects/cando/src/chem/matter.cc:259:1")
( "chem::Matter_O::contentWithName" "contentWithName" "/home/meister/Dev/clasp/projects/cando/src/chem/matter.cc:296:1")
( "chem::Matter_O::makeAllAtomNamesInEachResidueUnique" "makeAllAtomNamesInEachResidueUnique" "/home/meister/Dev/clasp/projects/cando/src/chem/matter.cc:331:1")
( "chem::Matter_O::fillInImplicitHydrogens" "fillInImplicitHydrogens" "/home/meister/Dev/clasp/projects/cando/src/chem/matter.cc:340:1")
( "chem::Matter_O::randomizeAtomPositions" "randomizeAtomPositions" "/home/meister/Dev/clasp/projects/cando/src/chem/matter.cc:349:1")
( "chem::Matter_O::perturbAtomPositions" "perturbAtomPositions" "/home/meister/Dev/clasp/projects/cando/src/chem/matter.cc:359:1")
( "chem::Matter_O::contentIndexWithName" "contentIndexWithName" "/home/meister/Dev/clasp/projects/cando/src/chem/matter.cc:375:1")
( "chem::Matter_O::contentWithId" "contentWithId" "/home/meister/Dev/clasp/projects/cando/src/chem/matter.cc:394:1")
( "chem::Matter_O::hasContentWithId" "hasContentWithId" "/home/meister/Dev/clasp/projects/cando/src/chem/matter.cc:415:1")
( "chem::Matter_O::contentIndexWithId" "contentIndexWithId" "/home/meister/Dev/clasp/projects/cando/src/chem/matter.cc:479:1")
( "chem::Matter_O::contentIndex" "contentIndex" "/home/meister/Dev/clasp/projects/cando/src/chem/matter.cc:499:1")
( "chem::Matter_O::addMatter" "addMatter" "/home/meister/Dev/clasp/projects/cando/src/chem/matter.cc:515:1")
( "chem::Matter_O::applyTransformToAtoms" "applyTransformToAtoms" "/home/meister/Dev/clasp/projects/cando/src/chem/matter.cc:581:1")
( "chem::Matter_O::invertStructureAndRestraints" "invertStructureAndRestraints" "/home/meister/Dev/clasp/projects/cando/src/chem/matter.cc:593:1")
( "chem::Matter_O::translateAllAtoms" "translateAllAtoms" "/home/meister/Dev/clasp/projects/cando/src/chem/matter.cc:619:1")
( "chem::Matter_O::testConsistancy" "testConsistancy" "/home/meister/Dev/clasp/projects/cando/src/chem/matter.cc:639:1")
( "chem::Matter_O::setAllAtomMasks" "setAllAtomMasks" "/home/meister/Dev/clasp/projects/cando/src/chem/matter.cc:692:1")
( "chem::Matter_O::setAtomAliasesForResiduesNamed" "setAtomAliasesForResiduesNamed" "/home/meister/Dev/clasp/projects/cando/src/chem/matter.cc:720:1")
( "chem::Matter_O::geometricCenter" "geometricCenter" "/home/meister/Dev/clasp/projects/cando/src/chem/matter.cc:766:1")
( "chem::Matter_O::boundingBox" "boundingBox" "/home/meister/Dev/clasp/projects/cando/src/chem/matter.cc:792:1")
( "chem::Matter_O::contentsAsCons" "contentsAsCons" "/home/meister/Dev/clasp/projects/cando/src/chem/matter.cc:815:1")
( "chem::Matter_O::allAtoms" "allAtoms" "/home/meister/Dev/clasp/projects/cando/src/chem/matter.cc:828:1")
( "chem::Matter_O::aliasResidueOrNil" "aliasResidueOrNil" "/home/meister/Dev/clasp/projects/cando/src/chem/matter.cc:859:1")
( "chem::Matter_O::aliasResidue" "aliasResidue" "/home/meister/Dev/clasp/projects/cando/src/chem/matter.cc:873:1")
( "chem::Matter_O::aliasAtomOrNil" "aliasAtomOrNil" "/home/meister/Dev/clasp/projects/cando/src/chem/matter.cc:880:1")
( "chem::Matter_O::aliasAtom" "aliasAtom" "/home/meister/Dev/clasp/projects/cando/src/chem/matter.cc:887:1")
( "chem::Matter_O::allAtomsOfElementAsList" "allAtomsOfElementAsList" "/home/meister/Dev/clasp/projects/cando/src/chem/matter.cc:898:1")
( "chem::Matter_O::allAtomsAsCons" "allAtomsAsCons" "/home/meister/Dev/clasp/projects/cando/src/chem/matter.cc:954:1")
( "chem::Matter_O::allBondsAsCons" "allBondsAsCons" "/home/meister/Dev/clasp/projects/cando/src/chem/matter.cc:969:1")
( "chem::Matter_O::allAnglesAsCons" "allAnglesAsCons" "/home/meister/Dev/clasp/projects/cando/src/chem/matter.cc:987:1")
( "chem::Matter_O::allImproperTorsionsAsCons" "allImproperTorsionsAsCons" "/home/meister/Dev/clasp/projects/cando/src/chem/matter.cc:1007:1")
( "chem::Matter_O::allProperTorsionsAsCons" "allProperTorsionsAsCons" "/home/meister/Dev/clasp/projects/cando/src/chem/matter.cc:1035:1")
( "chem::Matter_O::buildAtomIdMap" "buildAtomIdMap" "/home/meister/Dev/clasp/projects/cando/src/chem/matter.cc:1088:1")
( "chem::Matter_O::atomWithAtomId" "atomWithAtomId" "/home/meister/Dev/clasp/projects/cando/src/chem/matter.cc:1093:1")
( "chem::Bond_O::setProperty" "setProperty" "/home/meister/Dev/clasp/projects/cando/src/chem/bond.cc:178:1")
( "chem::Bond_O::getProperty" "getProperty" "/home/meister/Dev/clasp/projects/cando/src/chem/bond.cc:184:1")
( "chem::Bond_O::hasProperty" "hasProperty" "/home/meister/Dev/clasp/projects/cando/src/chem/bond.cc:193:1")
( "chem::Bond_O::getOtherAtom" "getOtherAtom" "/home/meister/Dev/clasp/projects/cando/src/chem/bond.cc:200:1")
( "chem::Bond_O::getOrderAsString" "getOrderAsString" "/home/meister/Dev/clasp/projects/cando/src/chem/bond.cc:323:1")
( "chem::Monomer_O::getGeneralMonomerContext" "getGeneralMonomerContext" "/home/meister/Dev/clasp/projects/cando/src/chem/monomer.cc:96:5")
( "chem::Monomer_O::getHasError" "getHasError" "/home/meister/Dev/clasp/projects/cando/src/chem/monomer.cc:130:5")
( "chem::Monomer_O::getStatusMessage" "getStatusMessage" "/home/meister/Dev/clasp/projects/cando/src/chem/monomer.cc:131:5")
( "chem::Monomer_O::plugNamesAndCouplingsAsCons" "plugNamesAndCouplingsAsCons" "/home/meister/Dev/clasp/projects/cando/src/chem/monomer.cc:136:5")
( "chem::Monomer_O::setAliasesFromCons" "setAliasesFromCons" "/home/meister/Dev/clasp/projects/cando/src/chem/monomer.cc:175:5")
( "chem::Monomer_O::hasTemporaryResidue" "hasTemporaryResidue" "/home/meister/Dev/clasp/projects/cando/src/chem/monomer.cc:182:5")
( "chem::Monomer_O::getAliasesAsString" "getAliasesAsString" "/home/meister/Dev/clasp/projects/cando/src/chem/monomer.cc:230:5")
( "chem::Monomer_O::checkForBadConnections" "checkForBadConnections" "/home/meister/Dev/clasp/projects/cando/src/chem/monomer.cc:244:5")
( "chem::Monomer_O::throwIfBadConnections" "throwIfBadConnections" "/home/meister/Dev/clasp/projects/cando/src/chem/monomer.cc:269:5")
( "chem::Monomer_O::checkForErrorsAndUnknownContexts" "checkForErrorsAndUnknownContexts" "/home/meister/Dev/clasp/projects/cando/src/chem/monomer.cc:281:5")
( "chem::Monomer_O::getSpecificMonomerContext" "getSpecificMonomerContext" "/home/meister/Dev/clasp/projects/cando/src/chem/monomer.cc:290:5")
( "chem::Monomer_O::getTopology" "getTopology" "/home/meister/Dev/clasp/projects/cando/src/chem/monomer.cc:346:5")
( "chem::Monomer_O::getInCoupling" "getInCoupling" "/home/meister/Dev/clasp/projects/cando/src/chem/monomer.cc:393:5")
( "chem::Monomer_O::hasInCoupling" "hasInCoupling" "/home/meister/Dev/clasp/projects/cando/src/chem/monomer.cc:429:5")
( "chem::Monomer_O::getConstitution" "getConstitution" "/home/meister/Dev/clasp/projects/cando/src/chem/monomer.cc:466:5")
( "chem::Monomer_O::addCoupling" "addCoupling" "/home/meister/Dev/clasp/projects/cando/src/chem/monomer.cc:532:5")
( "chem::Monomer_O::setInCoupling" "setInCoupling" "/home/meister/Dev/clasp/projects/cando/src/chem/monomer.cc:555:5")
( "chem::Monomer_O::addOutCoupling" "addOutCoupling" "/home/meister/Dev/clasp/projects/cando/src/chem/monomer.cc:568:5")
( "chem::Monomer_O::removeCouplingToMonomer" "removeCouplingToMonomer" "/home/meister/Dev/clasp/projects/cando/src/chem/monomer.cc:578:5")
( "chem::Monomer_O::removeCoupling" "removeCoupling" "/home/meister/Dev/clasp/projects/cando/src/chem/monomer.cc:653:5")
( "chem::MultiMonomer_O::setGroupName" "setGroupName" "/home/meister/Dev/clasp/projects/cando/src/chem/monomer.cc:779:5")
( "chem::MultiMonomer_O::getOneMonomer" "getOneMonomer" "/home/meister/Dev/clasp/projects/cando/src/chem/monomer.cc:873:5")
( "chem::Monomer_O::isMonomerContextValid" "isMonomerContextValid" "/home/meister/Dev/clasp/projects/cando/src/chem/monomer.cc:958:5")
( "chem::MultiMonomer_O::getOneMonomerWithName" "getOneMonomerWithName" "/home/meister/Dev/clasp/projects/cando/src/chem/monomer.cc:977:5")
( "chem::MultiMonomer_O::getInterestingAtomIndexer" "getInterestingAtomIndexer" "/home/meister/Dev/clasp/projects/cando/src/chem/monomer.cc:989:5")
( "chem::SearchStatistics_O::incrementBuilds" "incrementBuilds" "/home/meister/Dev/clasp/projects/cando/src/chem/searchStatistics.cc:66:1")
( "chem::SearchStatistics_O::getBuilds" "getBuilds" "/home/meister/Dev/clasp/projects/cando/src/chem/searchStatistics.cc:76:1")
( "chem::SearchStatistics_O::incrementRejects" "incrementRejects" "/home/meister/Dev/clasp/projects/cando/src/chem/searchStatistics.cc:82:1")
( "chem::SearchStatistics_O::getRejects" "getRejects" "/home/meister/Dev/clasp/projects/cando/src/chem/searchStatistics.cc:87:1")
( "chem::SearchStatistics_O::incrementHits" "incrementHits" "/home/meister/Dev/clasp/projects/cando/src/chem/searchStatistics.cc:93:1")
( "chem::SearchStatistics_O::getHits" "getHits" "/home/meister/Dev/clasp/projects/cando/src/chem/searchStatistics.cc:98:1")
( "cffi::Pointer_O::PERCENTmem_ref" "CFFI-SYS:PERCENTmem_ref" "/home/meister/Dev/clasp/src/cffi/cffi.cc:284:1")
( "cffi::Pointer_O::PERCENTsetf_mem_ref" "CFFI-SYS:PERCENTsetf_mem_ref" "/home/meister/Dev/clasp/src/cffi/cffi.cc:367:1")
( "cffi::Pointer_O::foreign_free" "CFFI-SYS:foreign_free" "/home/meister/Dev/clasp/src/cffi/cffi.cc:474:1")
( "cffi::Pointer_O::inc_pointer" "CFFI-SYS:inc-pointer" "/home/meister/Dev/clasp/src/cffi/cffi.cc:482:1")
( "chem::Aggregate_O::atomWithId" "atomWithId" "/home/meister/Dev/clasp/projects/cando/src/chem/aggregate.cc:240:5")
( "chem::Aggregate_O::atomsWithChimeraSpecifications" "atomsWithChimeraSpecifications" "/home/meister/Dev/clasp/projects/cando/src/chem/aggregate.cc:302:1")
( "chem::Aggregate_O::removeMolecule" "removeMolecule" "/home/meister/Dev/clasp/projects/cando/src/chem/aggregate.cc:363:5")
( "chem::Aggregate_O::separateMolecules" "separateMolecules" "/home/meister/Dev/clasp/projects/cando/src/chem/aggregate.cc:379:5")
( "chem::Aggregate_O::firstMoleculeWithAtomNamed" "firstMoleculeWithAtomNamed" "/home/meister/Dev/clasp/projects/cando/src/chem/aggregate.cc:415:5")
( "chem::Aggregate_O::writeToFile" "writeToFile" "/home/meister/Dev/clasp/projects/cando/src/chem/aggregate.cc:463:5")
( "chem::Aggregate_O::firstMolecule" "firstMolecule" "/home/meister/Dev/clasp/projects/cando/src/chem/aggregate.cc:491:5")
( "chem::Aggregate_O::firstMoleculeName" "firstMoleculeName" "/home/meister/Dev/clasp/projects/cando/src/chem/aggregate.cc:499:5")
( "chem::Aggregate_O::perturbAtomPositions" "perturbAtomPositions" "/home/meister/Dev/clasp/projects/cando/src/chem/aggregate.cc:531:5")
( "chem::Trajectory_O::addFrame" "addFrame" "/home/meister/Dev/clasp/projects/cando/src/chem/trajectory.cc:170:1")
( "chem::Trajectory_O::numberOfTrajectoryFrames" "numberOfTrajectoryFrames" "/home/meister/Dev/clasp/projects/cando/src/chem/trajectory.cc:180:1")
( "chem::Trajectory_O::getTrajectoryFrame" "getTrajectoryFrame" "/home/meister/Dev/clasp/projects/cando/src/chem/trajectory.cc:186:1")
( "chem::Trajectory_O::applyTrajectoryFrameToMatter" "applyTrajectoryFrameToMatter" "/home/meister/Dev/clasp/projects/cando/src/chem/trajectory.cc:205:1")
( "geom::BoundingBox_O::getMinX" "getMinX" "/home/meister/Dev/clasp/projects/cando/src/geom/boundingBox.cc:28:5")
( "geom::BoundingBox_O::getMaxX" "getMaxX" "/home/meister/Dev/clasp/projects/cando/src/geom/boundingBox.cc:29:5")
( "geom::BoundingBox_O::getMinY" "getMinY" "/home/meister/Dev/clasp/projects/cando/src/geom/boundingBox.cc:30:5")
( "geom::BoundingBox_O::getMaxY" "getMaxY" "/home/meister/Dev/clasp/projects/cando/src/geom/boundingBox.cc:31:5")
( "geom::BoundingBox_O::getMinZ" "getMinZ" "/home/meister/Dev/clasp/projects/cando/src/geom/boundingBox.cc:32:5")
( "geom::BoundingBox_O::getMaxZ" "getMaxZ" "/home/meister/Dev/clasp/projects/cando/src/geom/boundingBox.cc:33:5")
( "geom::BoundingBox_O::pad" "pad" "/home/meister/Dev/clasp/projects/cando/src/geom/boundingBox.cc:92:5")
( "adapt::QDomNode_O::isLeaf" "isLeaf" "/home/meister/Dev/clasp/projects/cando/src/adapt/quickDom.cc:207:5")
( "adapt::QDomNode_O::children" "children" "/home/meister/Dev/clasp/projects/cando/src/adapt/quickDom.cc:212:1")
( "adapt::QDomNode_O::writeToFileName" "writeToFileName" "/home/meister/Dev/clasp/projects/cando/src/adapt/quickDom.cc:228:1")
( "adapt::QDomNode_O::appendToFileName" "appendToFileName" "/home/meister/Dev/clasp/projects/cando/src/adapt/quickDom.cc:236:1")
( "adapt::QDomNode_O::dump" "dump" "/home/meister/Dev/clasp/projects/cando/src/adapt/quickDom.cc:475:1")
( "adapt::QDomNode_O::childWithName" "childWithName" "/home/meister/Dev/clasp/projects/cando/src/adapt/quickDom.cc:513:1")
( "adapt::QDomNode_O::onlyChild" "onlyChild" "/home/meister/Dev/clasp/projects/cando/src/adapt/quickDom.cc:537:1")
( "adapt::QDomNode_O::hasChildrenWithName" "hasChildrenWithName" "/home/meister/Dev/clasp/projects/cando/src/adapt/quickDom.cc:574:1")
( "adapt::QDomNode_O::asString" "asString" "/home/meister/Dev/clasp/projects/cando/src/adapt/quickDom.cc:744:1")
( "adapt::QDomNode_O::addChild" "addChild" "/home/meister/Dev/clasp/projects/cando/src/adapt/quickDom.cc:752:1")
( "chem::VirtualSphere_O::dump" "dump" "/home/meister/Dev/clasp/projects/cando/src/chem/virtualSphere.cc:274:1")
( "chem::VirtualSphere_O::setMouseStartSymbol" "setMouseStart" "/home/meister/Dev/clasp/projects/cando/src/chem/virtualSphere.cc:303:5")
( "chem::VirtualSphere_O::setMouseMove" "setMouseMove" "/home/meister/Dev/clasp/projects/cando/src/chem/virtualSphere.cc:322:1")
( "chem::VirtualSphere_O::setMouseXAxisWheelChange" "setMouseXAxisWheelChange" "/home/meister/Dev/clasp/projects/cando/src/chem/virtualSphere.cc:401:5")
( "chem::VirtualSphere_O::setMouseYAxisWheelChange" "setMouseYAxisWheelChange" "/home/meister/Dev/clasp/projects/cando/src/chem/virtualSphere.cc:444:5")
( "chem::MonomerCoordinates_O::defineFromConformationExplorer" "defineFromConformationExplorer" "/home/meister/Dev/clasp/projects/cando/src/chem/monomerCoordinates.cc:214:1")
( "chem::MonomerCoordinates_O::testExtraction" "testExtraction" "/home/meister/Dev/clasp/projects/cando/src/chem/monomerCoordinates.cc:232:1")
( "core::LambdaListHandler_O::lambdaList" "LambdaListHandler-lambdaList" "/home/meister/Dev/clasp/src/core/lambdaListHandler.cc:117:1")
( "core::LambdaListHandler_O::single_dispatch_on_argument" "single-dispatch-on-argument" "/home/meister/Dev/clasp/src/core/lambdaListHandler.cc:1014:1")
( "core::LambdaListHandler_O::processLambdaListHandler" "processLambdaListHandler" "/home/meister/Dev/clasp/src/core/lambdaListHandler.cc:1093:1")
( "core::LambdaListHandler_O::namesOfLexicalVariables" "namesOfLexicalVariables" "/home/meister/Dev/clasp/src/core/lambdaListHandler.cc:1154:1")
( "core::LambdaListHandler_O::namesOfLexicalVariablesForDebugging" "namesOfLexicalVariablesForDebugging" "/home/meister/Dev/clasp/src/core/lambdaListHandler.cc:1170:1")
( "core::Regex_O::regexMatches" "regexMatches" "/home/meister/Dev/clasp/src/core/regex.cc:93:1")
( "core::Regex_O::regexMatch" "regexMatch" "/home/meister/Dev/clasp/src/core/regex.cc:98:1")
( "core::Regex_O::regexSedReplace" "regexSedReplace" "/home/meister/Dev/clasp/src/core/regex.cc:106:1")
( "core::RegexMatch_O::matched" "regex-match-matched" "/home/meister/Dev/clasp/src/core/regex.cc:115:1")
( "core::RegexMatch_O::size" "regex-match-length" "/home/meister/Dev/clasp/src/core/regex.cc:148:1")
( "core::RegexMatch_O::part" "regex-match-part" "/home/meister/Dev/clasp/src/core/regex.cc:153:1")
( "chem::Topology_O::getMonomerContext" "getMonomerContext" "/home/meister/Dev/clasp/projects/cando/src/chem/topology.cc:207:5")
( "chem::Topology_O::properties" "properties" "/home/meister/Dev/clasp/projects/cando/src/chem/topology.cc:218:5")
( "chem::Topology_O::getInPlug" "getInPlug" "/home/meister/Dev/clasp/projects/cando/src/chem/topology.cc:237:5")
( "chem::Topology_O::plugsAsCons" "plugsAsCons" "/home/meister/Dev/clasp/projects/cando/src/chem/topology.cc:250:5")
( "chem::Topology_O::plugsWithMatesAsCons" "plugsWithMatesAsCons" "/home/meister/Dev/clasp/projects/cando/src/chem/topology.cc:267:5")
( "chem::Topology_O::outPlugsAsCons" "outPlugsAsCons" "/home/meister/Dev/clasp/projects/cando/src/chem/topology.cc:285:5")
( "chem::Topology_O::getConstitution" "getConstitution" "/home/meister/Dev/clasp/projects/cando/src/chem/topology.cc:304:5")
( "chem::Topology_O::hasFlag" "hasFlag" "/home/meister/Dev/clasp/projects/cando/src/chem/topology.cc:407:5")
( "chem::Topology_O::matchesContext" "matchesContext" "/home/meister/Dev/clasp/projects/cando/src/chem/topology.cc:413:5")
( "chem::Topology_O::hasPlugNamed" "hasPlugNamed" "/home/meister/Dev/clasp/projects/cando/src/chem/topology.cc:427:5")
( "chem::Topology_O::plugNamed" "plugNamed" "/home/meister/Dev/clasp/projects/cando/src/chem/topology.cc:441:5")
( "chem::Topology_O::setTemporaryObject" "setTemporaryObject" "/home/meister/Dev/clasp/projects/cando/src/chem/topology.cc:470:5")
( "chem::Topology_O::getTemporaryObject" "getTemporaryObject" "/home/meister/Dev/clasp/projects/cando/src/chem/topology.cc:476:5")
( "chem::Topology_O::lookupOrCreateStereoisomerAtoms" "lookupOrCreateStereoisomerAtoms" "/home/meister/Dev/clasp/projects/cando/src/chem/topology.cc:483:5")
( "core::Bignum_O::as_uint64_string" "core:asUint64String" "/home/meister/Dev/clasp/src/core/bignum.cc:132:1")
( "core::Bignum_O::fits_sint_p" "core:fitsSintP" "/home/meister/Dev/clasp/src/core/bignum.cc:140:1")
( "core::SexpLoadArchive_O::parseFromObject" "parseFromObject" "/home/meister/Dev/clasp/src/core/sexpLoadArchive.cc:121:1")
( "core::SexpLoadArchive_O::parseFromStream" "parseFromStream" "/home/meister/Dev/clasp/src/core/sexpLoadArchive.cc:128:1")
( "core::HashTable_O::hashTableCount" "hash-table-count" "/home/meister/Dev/clasp/src/core/hashTable.cc:505:1")
( "core::HashTable_O::hashTableSize" "hash-table-size" "/home/meister/Dev/clasp/src/core/hashTable.cc:517:1")
( "core::HashTable_O::hashIndex" "core:hashIndex" "/home/meister/Dev/clasp/src/core/hashTable.cc:629:1")
( "core::HashTable_O::hash_table_setf_gethash" "core:hashTableSetfGethash" "/home/meister/Dev/clasp/src/core/hashTable.cc:666:1")
( "core::HashTable_O::hash_table_dump" "core:hashTableDump" "/home/meister/Dev/clasp/src/core/hashTable.cc:845:1")
( "core::HashTable_O::hashTableNumberOfHashes" "core:hashTableNumberOfHashes" "/home/meister/Dev/clasp/src/core/hashTable.cc:931:1")
( "core::HashTable_O::hashTableAlistAtHash" "core:hashTableAlistAtHash" "/home/meister/Dev/clasp/src/core/hashTable.cc:935:1")
( "chem::CDFragment_O::asConstitutionAtoms" "asConstitutionAtoms" "/home/meister/Dev/clasp/projects/cando/src/chem/chemdraw.cc:826:5")
( "chem::ChemDraw_O::asAggregate" "asAggregate" "/home/meister/Dev/clasp/projects/cando/src/chem/chemdraw.cc:1152:5")
( "chem::ChemDraw_O::getFragments" "getFragments" "/home/meister/Dev/clasp/projects/cando/src/chem/chemdraw.cc:1164:5")
( "chem::ChemDraw_O::getSubSetOfFragments" "getSubSetOfFragments" "/home/meister/Dev/clasp/projects/cando/src/chem/chemdraw.cc:1176:5")
( "chem::CandoDatabase_O::constitutionsAsCons" "constitutionsAsCons" "/home/meister/Dev/clasp/projects/cando/src/chem/candoDatabase.cc:101:5")
( "chem::CandoDatabase_O::addEntity" "addEntity" "/home/meister/Dev/clasp/projects/cando/src/chem/candoDatabase.cc:113:5")
( "chem::CandoDatabase_O::representedEntityNameSetsAsCons" "representedEntityNameSetsAsCons" "/home/meister/Dev/clasp/projects/cando/src/chem/candoDatabase.cc:124:5")
( "chem::CandoDatabase_O::recognizesRepresentedEntityNameSet" "recognizesRepresentedEntityNameSet" "/home/meister/Dev/clasp/projects/cando/src/chem/candoDatabase.cc:135:5")
( "chem::CandoDatabase_O::addFrameRecognizer" "addFrameRecognizer" "/home/meister/Dev/clasp/projects/cando/src/chem/candoDatabase.cc:172:5")
( "chem::CandoDatabase_O::recognizesFrameRecognizerName" "recognizesFrameRecognizerName" "/home/meister/Dev/clasp/projects/cando/src/chem/candoDatabase.cc:178:5")
( "chem::CandoDatabase_O::getEntityNameSet" "getEntityNameSet" "/home/meister/Dev/clasp/projects/cando/src/chem/candoDatabase.cc:211:5")
( "chem::CandoDatabase_O::getRepresentedEntityNameSet" "getRepresentedEntityNameSet" "/home/meister/Dev/clasp/projects/cando/src/chem/candoDatabase.cc:218:5")
( "chem::CandoDatabase_O::recognizesSetOrConstitutionOrMonomerName" "recognizesSetOrConstitutionOrMonomerName" "/home/meister/Dev/clasp/projects/cando/src/chem/candoDatabase.cc:225:5")
( "chem::CandoDatabase_O::getEntity" "getEntity" "/home/meister/Dev/clasp/projects/cando/src/chem/candoDatabase.cc:230:5")
( "chem::CandoDatabase_O::expandEntityNameToTerminals" "expandEntityNameToTerminals" "/home/meister/Dev/clasp/projects/cando/src/chem/candoDatabase.cc:252:5")
( "chem::CandoDatabase_O::expandEntityNamesToTerminals" "expandEntityNamesToTerminals" "/home/meister/Dev/clasp/projects/cando/src/chem/candoDatabase.cc:258:5")
( "chem::CandoDatabase_O::getMonomersForSetOrConstitutionOrMonomerName" "getMonomersForSetOrConstitutionOrMonomerName" "/home/meister/Dev/clasp/projects/cando/src/chem/candoDatabase.cc:285:5")
( "chem::CandoDatabase_O::recognizesNameOrPdb" "recognizesNameOrPdb" "/home/meister/Dev/clasp/projects/cando/src/chem/candoDatabase.cc:335:5")
( "chem::CandoDatabase_O::constitutionForNameOrPdb" "constitutionForNameOrPdb" "/home/meister/Dev/clasp/projects/cando/src/chem/candoDatabase.cc:365:5")
( "chem::CandoDatabase_O::constitutionNameForNameOrPdb" "constitutionNameForNameOrPdb" "/home/meister/Dev/clasp/projects/cando/src/chem/candoDatabase.cc:374:5")
( "chem::CandoDatabase_O::addMonomerCoordinates" "addMonomerCoordinates" "/home/meister/Dev/clasp/projects/cando/src/chem/candoDatabase.cc:606:5")
( "chem::CandoDatabase_O::uniqueMonomerCoordinatesAsCons" "uniqueMonomerCoordinatesAsCons" "/home/meister/Dev/clasp/projects/cando/src/chem/candoDatabase.cc:637:5")
( "chem::CandoDatabase_O::monomerCoordinatesKeysAsCons" "monomerCoordinatesKeysAsCons" "/home/meister/Dev/clasp/projects/cando/src/chem/candoDatabase.cc:657:5")
( "chem::CandoDatabase_O::recognizesMonomerCoordinatesKey" "recognizesMonomerCoordinatesKey" "/home/meister/Dev/clasp/projects/cando/src/chem/candoDatabase.cc:675:5")
( "chem::CandoDatabase_O::getMonomerCoordinatesWithKey" "getMonomerCoordinatesWithKey" "/home/meister/Dev/clasp/projects/cando/src/chem/candoDatabase.cc:680:5")
( "chem::CandoDatabase_O::get" "get" "/home/meister/Dev/clasp/projects/cando/src/chem/candoDatabase.cc:690:5")
( "chem::CandoDatabase_O::recognizesContext" "recognizesContext" "/home/meister/Dev/clasp/projects/cando/src/chem/candoDatabase.cc:700:5")
( "chem::CandoDatabase_O::saveAs" "saveAs" "/home/meister/Dev/clasp/projects/cando/src/chem/candoDatabase.cc:710:5")
( "chem::CandoDatabase_O::allSpecificMonomerContexts" "allSpecificMonomerContexts" "/home/meister/Dev/clasp/projects/cando/src/chem/candoDatabase.cc:769:5")
( "adapt::StringSet_O::insertConsStrings" "insertConsStrings" "/home/meister/Dev/clasp/projects/cando/src/adapt/stringSet.cc:56:1")
( "adapt::StringSet_O::insertStringSet" "insertStringSet" "/home/meister/Dev/clasp/projects/cando/src/adapt/stringSet.cc:71:1")
( "adapt::StringSet_O::asString" "asString" "/home/meister/Dev/clasp/projects/cando/src/adapt/stringSet.cc:108:1")
( "adapt::StringSet_O::contains" "contains" "/home/meister/Dev/clasp/projects/cando/src/adapt/stringSet.cc:142:1")
( "adapt::StringSet_O::containsSubset" "containsSubset" "/home/meister/Dev/clasp/projects/cando/src/adapt/stringSet.cc:149:1")
( "adapt::StringSet_O::clear" "clear" "/home/meister/Dev/clasp/projects/cando/src/adapt/stringSet.cc:159:1")
( "adapt::StringSet_O::setFromString" "setFromString" "/home/meister/Dev/clasp/projects/cando/src/adapt/stringSet.cc:207:1")
( "adapt::StringSet_O::setUnion" "StringSetUnion" "/home/meister/Dev/clasp/projects/cando/src/adapt/stringSet.cc:215:1")
( "adapt::StringSet_O::intersection" "StringSetIntersection" "/home/meister/Dev/clasp/projects/cando/src/adapt/stringSet.cc:229:1")
( "adapt::StringSet_O::relativeComplement" "relativeComplement" "/home/meister/Dev/clasp/projects/cando/src/adapt/stringSet.cc:246:1")
( "adapt::StringSet_O::cartesianProductInsert" "cartesianProductInsert" "/home/meister/Dev/clasp/projects/cando/src/adapt/stringSet.cc:261:1")
( "adapt::StringSet_O::asCons" "asCons" "/home/meister/Dev/clasp/projects/cando/src/adapt/stringSet.cc:277:1")
( "chem::Atom_O::randomizeAtomPosition" "randomizeAtomPosition" "/home/meister/Dev/clasp/projects/cando/src/chem/atom.cc:117:1")
( "chem::Atom_O::perturbAtomPosition" "perturbAtomPosition" "/home/meister/Dev/clasp/projects/cando/src/chem/atom.cc:138:1")
( "chem::Atom_O::calculateStereochemicalConfiguration" "calculateStereochemicalConfiguration" "/home/meister/Dev/clasp/projects/cando/src/chem/atom.cc:444:5")
( "chem::Atom_O::setConfiguration" "setConfiguration" "/home/meister/Dev/clasp/projects/cando/src/chem/atom.cc:627:5")
( "chem::Atom_O::atLowerAddressThan" "atLowerAddressThan" "/home/meister/Dev/clasp/projects/cando/src/chem/atom.cc:636:5")
( "chem::Atom_O::bondedNeighbor" "bondedNeighbor" "/home/meister/Dev/clasp/projects/cando/src/chem/atom.cc:680:5")
( "chem::Atom_O::bondedOrder" "bondedOrder" "/home/meister/Dev/clasp/projects/cando/src/chem/atom.cc:685:5")
( "chem::Atom_O::numberOfBonds" "numberOfBonds" "/home/meister/Dev/clasp/projects/cando/src/chem/atom.cc:690:5")
( "chem::Atom_O::coordination" "coordination" "/home/meister/Dev/clasp/projects/cando/src/chem/atom.cc:695:5")
( "chem::Atom_O::numberOfOpenValence" "numberOfOpenValence" "/home/meister/Dev/clasp/projects/cando/src/chem/atom.cc:711:1")
( "chem::Atom_O::createImplicitHydrogenNames" "createImplicitHydrogenNames" "/home/meister/Dev/clasp/projects/cando/src/chem/atom.cc:749:1")
( "chem::Atom_O::bondTo" "bondTo" "/home/meister/Dev/clasp/projects/cando/src/chem/atom.cc:854:5")
( "chem::Atom_O::bondToSingle" "bondToSingle" "/home/meister/Dev/clasp/projects/cando/src/chem/atom.cc:878:5")
( "chem::Atom_O::getNameIndex" "getNameIndex" "/home/meister/Dev/clasp/projects/cando/src/chem/atom.cc:885:5")
( "chem::Atom_O::isBondedToAtomNamed" "isBondedToAtomNamed" "/home/meister/Dev/clasp/projects/cando/src/chem/atom.cc:957:5")
( "chem::Atom_O::bondedNeighborWithName" "bondedNeighborWithName" "/home/meister/Dev/clasp/projects/cando/src/chem/atom.cc:969:5")
( "chem::Atom_O::isBondedToElementOrder" "isBondedToElementOrder" "/home/meister/Dev/clasp/projects/cando/src/chem/atom.cc:982:5")
( "chem::Atom_O::hasBondWithOrder" "hasBondWithOrder" "/home/meister/Dev/clasp/projects/cando/src/chem/atom.cc:997:5")
( "chem::Atom_O::isBondedToElementHybridization" "isBondedToElementHybridization" "/home/meister/Dev/clasp/projects/cando/src/chem/atom.cc:1009:5")
( "chem::Atom_O::isBondedToElementHybridizationElementHybridization" "isBondedToElementHybridizationElementHybridization" "/home/meister/Dev/clasp/projects/cando/src/chem/atom.cc:1026:5")
( "chem::Atom_O::removeBondTo" "removeBondTo" "/home/meister/Dev/clasp/projects/cando/src/chem/atom.cc:1083:5")
( "chem::Atom_O::removeAllBonds" "removeAllBonds" "/home/meister/Dev/clasp/projects/cando/src/chem/atom.cc:1092:5")
( "chem::Atom_O::applyTransformToAtoms" "applyTransformToAtoms" "/home/meister/Dev/clasp/projects/cando/src/chem/atom.cc:1112:5")
( "chem::Atom_O::getElementAsString" "getElementAsString" "/home/meister/Dev/clasp/projects/cando/src/chem/atom.cc:1126:5")
( "chem::Atom_O::setPositionInNanometers" "setPositionInNanometers" "/home/meister/Dev/clasp/projects/cando/src/chem/atom.cc:1200:5")
( "chem::Atom_O::setTempInt" "setTempInt" "/home/meister/Dev/clasp/projects/cando/src/chem/atom.cc:1207:5")
( "chem::Atom_O::getTempInt" "getTempInt" "/home/meister/Dev/clasp/projects/cando/src/chem/atom.cc:1213:5")
( "chem::Atom_O::getConfigurationAsString" "getConfigurationAsString" "/home/meister/Dev/clasp/projects/cando/src/chem/atom.cc:1218:5")
( "chem::Atom_O::isBondedToWithBondOrder" "isBondedToWithBondOrder" "/home/meister/Dev/clasp/projects/cando/src/chem/atom.cc:1400:5")
( "chem::Atom_O::isBondedTo" "isBondedTo" "/home/meister/Dev/clasp/projects/cando/src/chem/atom.cc:1423:5")
( "chem::Atom_O::testConsistancy" "testConsistancy" "/home/meister/Dev/clasp/projects/cando/src/chem/atom.cc:1470:5")
( "chem::Atom_O::bondedAtomsAsList" "bondedAtomsAsList" "/home/meister/Dev/clasp/projects/cando/src/chem/atom.cc:1570:5")
( "chem::Atom_O::getBondList" "getBondList" "/home/meister/Dev/clasp/projects/cando/src/chem/atom.cc:1594:5")
( "chem::Atom_O::totalBondOrder" "totalBondOrder" "/home/meister/Dev/clasp/projects/cando/src/chem/atom.cc:1611:5")
( "chem::Atom_O::bondsAsList" "bondsAsList" "/home/meister/Dev/clasp/projects/cando/src/chem/atom.cc:1638:5")
( "chem::Atom_O::getHeavyAtomBondList" "getHeavyAtomBondList" "/home/meister/Dev/clasp/projects/cando/src/chem/atom.cc:1655:5")
( "chem::Atom_O::getAtomicNumber" "getAtomicNumber" "/home/meister/Dev/clasp/projects/cando/src/chem/atom.cc:1673:5")
( "chem::Atom_O::getBondedHydrogenCount" "getBondedHydrogenCount" "/home/meister/Dev/clasp/projects/cando/src/chem/atom.cc:1685:5")
( "chem::Atom_O::inRingSize" "inRingSize" "/home/meister/Dev/clasp/projects/cando/src/chem/atom.cc:1701:5")
( "chem::Atom_O::getValence" "getValence" "/home/meister/Dev/clasp/projects/cando/src/chem/atom.cc:1769:5")
( "chem::Atom_O::getBackSpan" "getBackSpan" "/home/meister/Dev/clasp/projects/cando/src/chem/atom.cc:1798:5")
( "chem::Atom_O::getNextSpan" "getNextSpan" "/home/meister/Dev/clasp/projects/cando/src/chem/atom.cc:1805:5")
( "chem::Atom_O::localSpanningTree" "localSpanningTree" "/home/meister/Dev/clasp/projects/cando/src/chem/atom.cc:1828:5")
( "chem::Atom_O::isConfigurable" "isConfigurable" "/home/meister/Dev/clasp/projects/cando/src/chem/atom.cc:1844:5")
( "chem::Atom_O::getResidueContainedBy" "getResidueContainedBy" "/home/meister/Dev/clasp/projects/cando/src/chem/atom.cc:1933:5")
( "core::VectorObjectsWithFillPtr_O::setf_fillPointer" "setf_fillPointer" "/home/meister/Dev/clasp/src/core/vectorObjectsWithFillPtr.cc:143:1")
( "chem::ReadAmberParameters_O::readTypes" "readTypes" "/home/meister/Dev/clasp/projects/cando/src/chem/readAmberParameters.cc:31:1")
( "chem::ReadAmberParameters_O::readParameters" "readParameters" "/home/meister/Dev/clasp/projects/cando/src/chem/readAmberParameters.cc:37:1")
( "chem::ReadAmberParameters_O::getForceField" "getForceField" "/home/meister/Dev/clasp/projects/cando/src/chem/readAmberParameters.cc:44:1")
( "core::Array_O::arrayTotalSize" "cl:arrayTotalSize" "/home/meister/Dev/clasp/src/core/array.cc:142:1")
( "core::Array_O::aref" "cl:aref" "/home/meister/Dev/clasp/src/core/array.cc:165:1")
( "core::Array_O::index" "core:index" "/home/meister/Dev/clasp/src/core/array.cc:210:1")
( "core::Array_O::arrayRowMajorIndex" "cl:arrayRowMajorIndex" "/home/meister/Dev/clasp/src/core/array.cc:215:1")
( "core::Array_O::arrayDimensions" "cl:array-dimensions" "/home/meister/Dev/clasp/src/core/array.cc:219:1")
( "core::Array_O::setf_aref" "core:array-setf-aref" "/home/meister/Dev/clasp/src/core/array.cc:231:1")
( "adapt::IndexedObjectBag_O::set_next_available_entry" "set_next_available_entry" "/home/meister/Dev/clasp/projects/cando/src/adapt/indexedObjectBag.cc:42:1")
( "adapt::IndexedObjectBag_O::entry" "get_entry" "/home/meister/Dev/clasp/projects/cando/src/adapt/indexedObjectBag.cc:49:1")
( "adapt::IndexedObjectBag_O::remove_entry" "remove_entry" "/home/meister/Dev/clasp/projects/cando/src/adapt/indexedObjectBag.cc:54:1")
( "chem::ZMatrixBondInternal_O::getBondAtomZMatrixName" "getBondAtomZMatrixName" "/home/meister/Dev/clasp/projects/cando/src/chem/zMatrix.cc:160:5")
( "chem::ZMatrixAngleInternal_O::getBondAtomZMatrixName" "getBondAtomZMatrixName" "/home/meister/Dev/clasp/projects/cando/src/chem/zMatrix.cc:276:5")
( "chem::ZMatrixAngleInternal_O::getAngleAtomZMatrixName" "getAngleAtomZMatrixName" "/home/meister/Dev/clasp/projects/cando/src/chem/zMatrix.cc:281:5")
( "chem::ZMatrixDihedralInternal_O::getBondAtomZMatrixName" "getBondAtomZMatrixName" "/home/meister/Dev/clasp/projects/cando/src/chem/zMatrix.cc:393:5")
( "chem::ZMatrixDihedralInternal_O::getAngleAtomZMatrixName" "getAngleAtomZMatrixName" "/home/meister/Dev/clasp/projects/cando/src/chem/zMatrix.cc:398:5")
( "chem::ZMatrixDihedralInternal_O::getDihedralAtomZMatrixName" "getDihedralAtomZMatrixName" "/home/meister/Dev/clasp/projects/cando/src/chem/zMatrix.cc:403:5")
( "chem::ZMatrix_O::getZMatrixAtomNameAtIndex" "get-zmatrix-atom-name-at-index" "/home/meister/Dev/clasp/projects/cando/src/chem/zMatrix.cc:504:5")
( "chem::ZMatrix_O::extractInternals" "extractInternals" "/home/meister/Dev/clasp/projects/cando/src/chem/zMatrix.cc:697:5")
( "chem::ZMatrix_O::entriesAsCons" "entriesAsCons" "/home/meister/Dev/clasp/projects/cando/src/chem/zMatrix.cc:719:5")
( "chem::ZMatrix_O::zMatrixEntryWithName" "zmatrix-entry-with-name" "/home/meister/Dev/clasp/projects/cando/src/chem/zMatrix.cc:724:5")
( "chem::ZMatrix_O::allZMatrixAtomNamesAsString" "all-zmatrix-atom-names-as-string" "/home/meister/Dev/clasp/projects/cando/src/chem/zMatrix.cc:735:5")
( "core::Cons_O::exactlyMatches" "core:exactlyMatches" "/home/meister/Dev/clasp/src/core/cons.cc:371:1")
( "core::Cons_O::extend" "core:extend" "/home/meister/Dev/clasp/src/core/cons.cc:621:1")
( "core::Cons_O::filterOutNil" "core:filterOutNil" "/home/meister/Dev/clasp/src/core/cons.cc:728:1")
( "core::Cons_O::olookupKeyObjectDefault" "core:lookupDefault" "/home/meister/Dev/clasp/src/core/cons.cc:922:1")
( "core::Cons_O::olookupKeyObject" "core:lookup" "/home/meister/Dev/clasp/src/core/cons.cc:942:1")
( "adapt::SymbolSet_O::insertConsSymbols" "insertConsSymbols" "/home/meister/Dev/clasp/projects/cando/src/adapt/symbolSet.cc:64:1")
( "adapt::SymbolSet_O::insertSymbolSet" "insertSymbolSet" "/home/meister/Dev/clasp/projects/cando/src/adapt/symbolSet.cc:72:1")
( "adapt::SymbolSet_O::asString" "asString" "/home/meister/Dev/clasp/projects/cando/src/adapt/symbolSet.cc:101:1")
( "adapt::SymbolSet_O::contains" "contains" "/home/meister/Dev/clasp/projects/cando/src/adapt/symbolSet.cc:156:1")
( "adapt::SymbolSet_O::containsSubset" "containsSubset" "/home/meister/Dev/clasp/projects/cando/src/adapt/symbolSet.cc:161:1")
( "adapt::SymbolSet_O::clear" "clear" "/home/meister/Dev/clasp/projects/cando/src/adapt/symbolSet.cc:172:1")
( "adapt::SymbolSet_O::setUnion" "adapt:SymbolSetUnion" "/home/meister/Dev/clasp/projects/cando/src/adapt/symbolSet.cc:218:1")
( "adapt::SymbolSet_O::intersection" "adapt:SymbolSetIntersection" "/home/meister/Dev/clasp/projects/cando/src/adapt/symbolSet.cc:227:1")
( "adapt::SymbolSet_O::relativeComplement" "relativeComplement" "/home/meister/Dev/clasp/projects/cando/src/adapt/symbolSet.cc:243:1")
( "adapt::SymbolSet_O::cartesianProduct" "cartesianProduct" "/home/meister/Dev/clasp/projects/cando/src/adapt/symbolSet.cc:258:1")
( "adapt::SymbolSet_O::asCons" "asCons" "/home/meister/Dev/clasp/projects/cando/src/adapt/symbolSet.cc:297:1")
( "chem::Molecule_O::removeResidue" "removeResidue" "/home/meister/Dev/clasp/projects/cando/src/chem/molecule.cc:131:1")
( "chem::Molecule_O::moveAllAtomsIntoFirstResidue" "moveAllAtomsIntoFirstResidue" "/home/meister/Dev/clasp/projects/cando/src/chem/molecule.cc:177:5")
( "chem::Molecule_O::copy" "copy" "/home/meister/Dev/clasp/projects/cando/src/chem/molecule.cc:229:5")
( "chem::Molecule_O::numberOfResiduesWithName" "numberOfResiduesWithName" "/home/meister/Dev/clasp/projects/cando/src/chem/molecule.cc:271:5")
( "chem::Molecule_O::getFirstResidueWithName" "getFirstResidueWithName" "/home/meister/Dev/clasp/projects/cando/src/chem/molecule.cc:278:5")
( "chem::SpanningLoop_O::setTop" "setTop" "/home/meister/Dev/clasp/projects/cando/src/chem/spanningLoop.cc:164:5")
( "chem::SpanningLoop_O::getAtom" "getAtom" "/home/meister/Dev/clasp/projects/cando/src/chem/spanningLoop.cc:195:5")
( "chem::SpanningLoop_O::advanceLoopAndProcess" "advanceLoopAndProcess" "/home/meister/Dev/clasp/projects/cando/src/chem/spanningLoop.cc:200:5")
( "chem::SpanningLoop_O::next" "next" "/home/meister/Dev/clasp/projects/cando/src/chem/spanningLoop.cc:338:1")
( "chem::SpanningLoop_O::allAtoms" "allAtoms" "/home/meister/Dev/clasp/projects/cando/src/chem/spanningLoop.cc:348:5")
( "core::WeakKeyMapping_O::valid" "weakKeyMappingValid" "/home/meister/Dev/clasp/src/core/weakKeyMapping.cc:84:1")
( "core::WeakKeyMapping_O::keyValue" "weakKeyMappingKeyValue" "/home/meister/Dev/clasp/src/core/weakKeyMapping.cc:89:1")
( "chem::Entity_O::constitution" "constitution" "/home/meister/Dev/clasp/projects/cando/src/chem/entity.cc:45:1")
( "chem::Entity_O::minimalRepresentativeList" "minimalRepresentativeList" "/home/meister/Dev/clasp/projects/cando/src/chem/entity.cc:61:5")
( "core::PosixTime_O::setToLocalTime" "setToLocalTime" "/home/meister/Dev/clasp/src/core/posixTime.cc:97:1")
( "core::PosixTime_O::sub" "sub" "/home/meister/Dev/clasp/src/core/posixTime.cc:110:1")
( "core::PosixTimeDuration_O::sub" "sub" "/home/meister/Dev/clasp/src/core/posixTime.cc:147:1")
( "core::PosixTimeDuration_O::totalSeconds" "totalSeconds" "/home/meister/Dev/clasp/src/core/posixTime.cc:154:1")
( "core::PosixTimeDuration_O::totalMilliseconds" "totalMilliseconds" "/home/meister/Dev/clasp/src/core/posixTime.cc:159:1")
( "core::PosixTimeDuration_O::seconds" "posix-time-duration-seconds" "/home/meister/Dev/clasp/src/core/posixTime.cc:180:1")
( "core::PosixTimeDuration_O::minutes" "minutes" "/home/meister/Dev/clasp/src/core/posixTime.cc:185:1")
( "core::PosixTimeDuration_O::hours" "hours" "/home/meister/Dev/clasp/src/core/posixTime.cc:190:1")
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( "core::PosixTimeDuration_O::toIsoString" "toIsoString" "/home/meister/Dev/clasp/src/core/posixTime.cc:200:1")
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( "chem::IterateMatter_O::advance" "advance" "/home/meister/Dev/clasp/projects/cando/src/chem/iterateMatter.cc:105:5")
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( "core::WeakPointer_O::value" "weakPointerValue" "/home/meister/Dev/clasp/src/core/weakPointer.cc:85:1")
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( "core::Symbol_O::makunbound" "makunbound" "/home/meister/Dev/clasp/src/core/symbol.cc:233:1")
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( "chem::ConformationExplorer_O::findClosestMatchingConformation" "findClosestMatchingConformation" "/home/meister/Dev/clasp/projects/cando/src/chem/conformationExplorer.cc:930:5")
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( "chem::ConformationExplorer_O::sortByEnergyAscendingForStage" "sortByEnergyAscendingForStage" "/home/meister/Dev/clasp/projects/cando/src/chem/conformationExplorer.cc:1002:5")
( "core::InvocationHistoryFrameIterator_O::prev" "frameIteratorPreviousFrame" "/home/meister/Dev/clasp/src/core/primitives.cc:1663:1")
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( "chem::Residue_O::copy" "copy" "/home/meister/Dev/clasp/projects/cando/src/chem/residue.cc:318:1")
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( "chem::Residue_O::removeAtomDeleteBonds" "removeAtomDeleteBonds" "/home/meister/Dev/clasp/projects/cando/src/chem/residue.cc:341:1")
( "chem::Residue_O::containsAtom" "containsAtom" "/home/meister/Dev/clasp/projects/cando/src/chem/residue.cc:363:1")
( "chem::Residue_O::removeAtomDontDeleteBonds" "removeAtomDontDeleteBonds" "/home/meister/Dev/clasp/projects/cando/src/chem/residue.cc:377:1")
( "chem::Residue_O::testIfAllAtomNamesAreUnique" "testIfAllAtomNamesAreUnique" "/home/meister/Dev/clasp/projects/cando/src/chem/residue.cc:420:1")
( "chem::Residue_O::getAtomNamesAsSymbolSet" "getAtomNamesAsSymbolSet" "/home/meister/Dev/clasp/projects/cando/src/chem/residue.cc:520:1")
( "chem::Residue_O::useAtomCoordinatesToDefineAnchors" "useAtomCoordinatesToDefineAnchors" "/home/meister/Dev/clasp/projects/cando/src/chem/residue.cc:659:1")
( "asttooling::Diagnostics::toStringFull" "toStringFull" "/home/meister/Dev/clasp/src/asttooling/Diagnostics.cc:242:1")
( "chem::PdbWriter_O::open" "open" "/home/meister/Dev/clasp/projects/cando/src/chem/pdb.cc:519:1")
( "chem::PdbWriter_O::writeModel" "writeModel" "/home/meister/Dev/clasp/projects/cando/src/chem/pdb.cc:553:5")
( "chem::PdbWriter_O::close" "close" "/home/meister/Dev/clasp/projects/cando/src/chem/pdb.cc:560:5")
( "chem::Twister_O::setFixedAndMovable" "setFixedAndMovable" "/home/meister/Dev/clasp/projects/cando/src/chem/twister.cc:52:1")
( "chem::Twister_O::addAtom" "addAtom" "/home/meister/Dev/clasp/projects/cando/src/chem/twister.cc:58:1")
( "chem::Twister_O::defineForDihedral" "defineForDihedral" "/home/meister/Dev/clasp/projects/cando/src/chem/twister.cc:137:1")
( "chem::Twister_O::defineForBond" "defineForBond" "/home/meister/Dev/clasp/projects/cando/src/chem/twister.cc:145:1")
( "chem::Twister_O::defineFixedAndMobile" "defineFixedAndMobile" "/home/meister/Dev/clasp/projects/cando/src/chem/twister.cc:151:1")
( "chem::Twister_O::rotate" "rotate" "/home/meister/Dev/clasp/projects/cando/src/chem/twister.cc:157:1")
( "chem::Twister_O::rotateAbsolute" "rotateAbsolute" "/home/meister/Dev/clasp/projects/cando/src/chem/twister.cc:192:1")
( "chem::TwisterDriver_O::addTwister" "addTwister" "/home/meister/Dev/clasp/projects/cando/src/chem/twister.cc:237:1")
( "chem::TwisterDriver_O::getTwister" "getTwister" "/home/meister/Dev/clasp/projects/cando/src/chem/twister.cc:243:1")
( "chem::TwisterDriver_O::perturbConformation" "perturbConformation" "/home/meister/Dev/clasp/projects/cando/src/chem/twister.cc:249:1")
( "llvmo::TargetMachine_O::addPassesToEmitFileAndRunPassManager" "addPassesToEmitFileAndRunPassManager" "/home/meister/Dev/clasp/src/llvmo/llvmoExpose.cc:281:1")
( "llvmo::TargetOptions_O::NoFramePointerElim" "NoFramePointerElim" "/home/meister/Dev/clasp/src/llvmo/llvmoExpose.cc:639:1")
( "llvmo::TargetOptions_O::setfNoFramePointerElim" "setfNoFramePointerElim" "/home/meister/Dev/clasp/src/llvmo/llvmoExpose.cc:643:1")
( "llvmo::TargetOptions_O::JITEmitDebugInfo" "JITEmitDebugInfo" "/home/meister/Dev/clasp/src/llvmo/llvmoExpose.cc:648:1")
( "llvmo::TargetOptions_O::setfJITEmitDebugInfo" "setfJITEmitDebugInfo" "/home/meister/Dev/clasp/src/llvmo/llvmoExpose.cc:652:1")
( "llvmo::TargetOptions_O::JITEmitDebugInfoToDisk" "JITEmitDebugInfoToDisk" "/home/meister/Dev/clasp/src/llvmo/llvmoExpose.cc:656:1")
( "llvmo::TargetOptions_O::setfJITEmitDebugInfoToDisk" "setfJITEmitDebugInfoToDisk" "/home/meister/Dev/clasp/src/llvmo/llvmoExpose.cc:660:1")
( "llvmo::LLVMTargetMachine_O::LLVMTargetMachine_addPassesToEmitFile" "LLVMTargetMachine_addPassesToEmitFile" "/home/meister/Dev/clasp/src/llvmo/llvmoExpose.cc:686:1")
( "llvmo::Module_O::getFunction" "getFunction" "/home/meister/Dev/clasp/src/llvmo/llvmoExpose.cc:1192:1")
( "llvmo::Module_O::valid" "moduleValid" "/home/meister/Dev/clasp/src/llvmo/llvmoExpose.cc:1200:1")
( "llvmo::Module_O::moduleDelete" "moduleDelete" "/home/meister/Dev/clasp/src/llvmo/llvmoExpose.cc:1205:1")
( "llvmo::Module_O::dump_namedMDList" "dump_namedMDList" "/home/meister/Dev/clasp/src/llvmo/llvmoExpose.cc:1211:1")
( "llvmo::Module_O::getOrCreateUniquedStringGlobalVariable" "getOrCreateUniquedStringGlobalVariable" "/home/meister/Dev/clasp/src/llvmo/llvmoExpose.cc:1225:1")
( "llvmo::Module_O::getGlobalList" "getGlobalList" "/home/meister/Dev/clasp/src/llvmo/llvmoExpose.cc:1257:1")
( "llvmo::ExecutionEngine_O::dependentModuleNames" "dependentModuleNames" "/home/meister/Dev/clasp/src/llvmo/llvmoExpose.cc:1281:1")
( "llvmo::ExecutionEngine_O::hasNamedModule" "hasNamedModule" "/home/meister/Dev/clasp/src/llvmo/llvmoExpose.cc:1304:1")
( "llvmo::ExecutionEngine_O::addGlobalMapping" "addGlobalMapping" "/home/meister/Dev/clasp/src/llvmo/llvmoExpose.cc:1326:1")
( "llvmo::ExecutionEngine_O::addModule" "addModule" "/home/meister/Dev/clasp/src/llvmo/llvmoExpose.cc:1331:1")
( "llvmo::ExecutionEngine_O::FindFunctionNamed" "FindFunctionNamed" "/home/meister/Dev/clasp/src/llvmo/llvmoExpose.cc:1338:1")
( "llvmo::DataLayout_O::copy" "DataLayoutCopy" "/home/meister/Dev/clasp/src/llvmo/llvmoExpose.cc:1397:1")
( "llvmo::EngineBuilder_O::setEngineKind" "setEngineKind" "/home/meister/Dev/clasp/src/llvmo/llvmoExpose.cc:1609:1")
( "llvmo::EngineBuilder_O::setTargetOptions" "setTargetOptions" "/home/meister/Dev/clasp/src/llvmo/llvmoExpose.cc:1644:1")
( "llvmo::EngineBuilder_O::createExecutionEngine" "create" "/home/meister/Dev/clasp/src/llvmo/llvmoExpose.cc:1674:1")
( "llvmo::Instruction_O::setMetadata" "setMetadata" "/home/meister/Dev/clasp/src/llvmo/llvmoExpose.cc:1964:1")
( "llvmo::Instruction_O::terminatorInstP" "terminatorInstP" "/home/meister/Dev/clasp/src/llvmo/llvmoExpose.cc:1984:1")
( "llvmo::SwitchInst_O::addCase" "addCase" "/home/meister/Dev/clasp/src/llvmo/llvmoExpose.cc:2220:1")
( "llvmo::APInt_O::toString" "toString" "/home/meister/Dev/clasp/src/llvmo/llvmoExpose.cc:2626:1")
( "llvmo::IRBuilderBase_O::restoreIP" "restoreIP" "/home/meister/Dev/clasp/src/llvmo/llvmoExpose.cc:2665:1")
( "llvmo::IRBuilderBase_O::saveIP" "saveIP" "/home/meister/Dev/clasp/src/llvmo/llvmoExpose.cc:2670:1")
( "llvmo::IRBuilderBase_O::SetCurrentDebugLocation" "SetCurrentDebugLocation" "/home/meister/Dev/clasp/src/llvmo/llvmoExpose.cc:2677:1")
( "llvmo::IRBuilderBase_O::SetCurrentDebugLocationToLineColumnScope" "SetCurrentDebugLocationToLineColumnScope" "/home/meister/Dev/clasp/src/llvmo/llvmoExpose.cc:2688:1")
( "llvmo::IRBuilder_O::CreateInvoke" "CreateInvoke" "/home/meister/Dev/clasp/src/llvmo/llvmoExpose.cc:2710:1")
( "llvmo::IRBuilder_O::CreateInBoundsGEP" "CreateInBoundsGEP" "/home/meister/Dev/clasp/src/llvmo/llvmoExpose.cc:2723:1")
( "llvmo::IRBuilder_O::CreateExtractValue" "CreateExtractValue" "/home/meister/Dev/clasp/src/llvmo/llvmoExpose.cc:2732:1")
( "llvmo::IRBuilder_O::CreateInsertValue" "CreateInsertValue" "/home/meister/Dev/clasp/src/llvmo/llvmoExpose.cc:2741:1")
( "llvmo::Function_O::getArgumentList" "getArgumentList" "/home/meister/Dev/clasp/src/llvmo/llvmoExpose.cc:3110:1")
( "llvmo::Function_O::appendBasicBlock" "appendBasicBlock" "/home/meister/Dev/clasp/src/llvmo/llvmoExpose.cc:3125:1")
( "llvmo::Function_O::setLiterals" "setLiterals" "/home/meister/Dev/clasp/src/llvmo/llvmoExpose.cc:3155:1")
( "llvmo::Function_O::literals" "literals" "/home/meister/Dev/clasp/src/llvmo/llvmoExpose.cc:3160:1")
( "llvmo::BasicBlock_O::empty" "BasicBlockEmpty" "/home/meister/Dev/clasp/src/llvmo/llvmoExpose.cc:3185:1")
( "llvmo::BasicBlock_O::back" "BasicBlockBack" "/home/meister/Dev/clasp/src/llvmo/llvmoExpose.cc:3190:1")
( "llvmo::Type_O::getPointerTo" "type-get-pointer-to" "/home/meister/Dev/clasp/src/llvmo/llvmoExpose.cc:3222:1")
( "llvmo::Type_O::getArrayNumElements" "getArrayNumElements" "/home/meister/Dev/clasp/src/llvmo/llvmoExpose.cc:3228:1")
( "llvmo::StructType_O::setBody" "setBody" "/home/meister/Dev/clasp/src/llvmo/llvmoExpose.cc:3357:1")
( "chem::RingFinder_O::findRings" "findRings" "/home/meister/Dev/clasp/projects/cando/src/chem/ringFinder.cc:731:1")
( "chem::RingFinder_O::getAllRingsAsListsOfAtoms" "getAllRingsAsListsOfAtoms" "/home/meister/Dev/clasp/projects/cando/src/chem/ringFinder.cc:829:1")
( "core::Str_O::asReal" "core:parse-real" "/home/meister/Dev/clasp/src/core/str.cc:176:1")
( "core::Str_O::countOccurances" "core:countOccurances" "/home/meister/Dev/clasp/src/core/str.cc:222:1")
( "core::Str_O::left" "core:left" "/home/meister/Dev/clasp/src/core/str.cc:234:1")
( "core::Str_O::right" "core:right" "/home/meister/Dev/clasp/src/core/str.cc:239:1")
( "core::Str_O::find" "core:string-find" "/home/meister/Dev/clasp/src/core/str.cc:244:1")
( "core::Str_O::substr" "core:substr" "/home/meister/Dev/clasp/src/core/str.cc:251:1")
( "core::Str_O::asSymbol" "core:asSymbol" "/home/meister/Dev/clasp/src/core/str.cc:256:1")
( "core::Str_O::asKeywordSymbol" "core:asKeywordSymbol" "/home/meister/Dev/clasp/src/core/str.cc:261:1")
( "core::Str_O::splitAtWhiteSpace" "core:splitAtWhiteSpace" "/home/meister/Dev/clasp/src/core/str.cc:267:1")
( "core::Str_O::split" "core:split" "/home/meister/Dev/clasp/src/core/str.cc:279:1")
( "chem::SuperposeEngine_O::debugString" "debugString" "/home/meister/Dev/clasp/projects/cando/src/chem/superposeEngine.cc:92:5")
( "chem::SuperposeEngine_O::getNumberOfFixedPoints" "getNumberOfFixedPoints" "/home/meister/Dev/clasp/projects/cando/src/chem/superposeEngine.cc:186:1")
( "chem::SuperposeEngine_O::getNumberOfMoveablePoints" "getNumberOfMoveablePoints" "/home/meister/Dev/clasp/projects/cando/src/chem/superposeEngine.cc:192:1")
( "chem::SuperposeEngine_O::rootMeanSquareDifference" "rootMeanSquareDifference" "/home/meister/Dev/clasp/projects/cando/src/chem/superposeEngine.cc:426:1")
( "chem::SuperposeEngine_O::setFixedPoints" "setFixedPoints" "/home/meister/Dev/clasp/projects/cando/src/chem/superposeEngine.cc:444:1")
( "chem::SuperposeEngine_O::setFixedAllPoints" "setFixedAllPoints" "/home/meister/Dev/clasp/projects/cando/src/chem/superposeEngine.cc:464:1")
( "chem::SuperposeEngine_O::setMoveablePoints" "setMoveablePoints" "/home/meister/Dev/clasp/projects/cando/src/chem/superposeEngine.cc:480:1")
( "chem::SuperposeEngine_O::setMoveableAllPoints" "setMoveableAllPoints" "/home/meister/Dev/clasp/projects/cando/src/chem/superposeEngine.cc:490:1")
( "chem::SuperposeEngine_O::superpose" "superpose" "/home/meister/Dev/clasp/projects/cando/src/chem/superposeEngine.cc:510:1")
( "chem::FrameRecognizer_O::compileSmarts" "compileSmarts" "/home/meister/Dev/clasp/projects/cando/src/chem/frameRecognizer.cc:18:1")
( "chem::FrameRecognizer_O::recognizes" "recognizes" "/home/meister/Dev/clasp/projects/cando/src/chem/frameRecognizer.cc:70:1")
( "chem::FrameRecognizer_O::getMatch" "getMatch" "/home/meister/Dev/clasp/projects/cando/src/chem/frameRecognizer.cc:78:1")
( "chem::FrameRecognizer_O::depth" "depth" "/home/meister/Dev/clasp/projects/cando/src/chem/frameRecognizer.cc:90:1")
( "chem::FrameRecognizer_O::getRecognizerName" "getRecognizerName" "/home/meister/Dev/clasp/projects/cando/src/chem/frameRecognizer.cc:97:5")
( "chem::FrameRecognizer_O::getGroupName" "getGroupName" "/home/meister/Dev/clasp/projects/cando/src/chem/frameRecognizer.cc:107:1")
( "geom::OMatrix_O::setFromString" "setFromString" "/home/meister/Dev/clasp/projects/cando/src/geom/omatrix.cc:42:5")
( "geom::OMatrix_O::asString" "asString" "/home/meister/Dev/clasp/projects/cando/src/geom/omatrix.cc:62:5")
( "geom::OMatrix_O::setToIdentity" "setToIdentity" "/home/meister/Dev/clasp/projects/cando/src/geom/omatrix.cc:63:5")
( "geom::OMatrix_O::setToIndexAsValue" "setToIndexAsValue" "/home/meister/Dev/clasp/projects/cando/src/geom/omatrix.cc:65:5")
( "geom::OMatrix_O::translate" "translate" "/home/meister/Dev/clasp/projects/cando/src/geom/omatrix.cc:66:5")
( "geom::OMatrix_O::rotationX" "rotationX" "/home/meister/Dev/clasp/projects/cando/src/geom/omatrix.cc:67:5")
( "geom::OMatrix_O::rotationY" "rotationY" "/home/meister/Dev/clasp/projects/cando/src/geom/omatrix.cc:68:5")
( "geom::OMatrix_O::rotationZ" "rotationZ" "/home/meister/Dev/clasp/projects/cando/src/geom/omatrix.cc:69:5")
( "core::BitVector_O::setBit" "core:setBit" "/home/meister/Dev/clasp/src/core/bitVector.cc:153:1")
( "core::BitVector_O::testBit" "core:testBit" "/home/meister/Dev/clasp/src/core/bitVector.cc:171:1")
( "core::BitVector_O::inPlaceOr" "core:inPlaceOr" "/home/meister/Dev/clasp/src/core/bitVector.cc:188:1")
( "core::BitVector_O::inPlaceAnd" "core:inPlaceAnd" "/home/meister/Dev/clasp/src/core/bitVector.cc:199:1")
( "core::BitVector_O::inPlaceXor" "core:inPlaceXor" "/home/meister/Dev/clasp/src/core/bitVector.cc:210:1")
( "core::BitVector_O::bitOr" "core:bitOr" "/home/meister/Dev/clasp/src/core/bitVector.cc:221:1")
( "core::BitVector_O::bitAnd" "core:bitAnd" "/home/meister/Dev/clasp/src/core/bitVector.cc:227:1")
( "core::BitVector_O::bitXor" "core:bitXor" "/home/meister/Dev/clasp/src/core/bitVector.cc:233:1")
( "core::BitVector_O::countSet" "core:countSet" "/home/meister/Dev/clasp/src/core/bitVector.cc:239:1")
( "core::BitVector_O::asString" "core:BitVector-asString" "/home/meister/Dev/clasp/src/core/bitVector.cc:250:1")
( "core::BitVector_O::dump" "core:dump" "/home/meister/Dev/clasp/src/core/bitVector.cc:290:1")
( "core::BitVector_O::lowestIndex" "core:lowestIndex" "/home/meister/Dev/clasp/src/core/bitVector.cc:304:1")
( "chem::ForceField_O::assignTypes" "assignTypes" "/home/meister/Dev/clasp/projects/cando/src/chem/forceField.cc:98:1")
( "chem::Plug_O::getConstitution" "getConstitution" "/home/meister/Dev/clasp/projects/cando/src/chem/plug.cc:256:5")
( "chem::Plug_O::otherSidePlugName" "otherSidePlugName" "/home/meister/Dev/clasp/projects/cando/src/chem/plug.cc:272:5")
( "chem::RingClosingPlug_O::ringClosingMatesAsCons" "ringClosingMatesAsCons" "/home/meister/Dev/clasp/projects/cando/src/chem/plug.cc:915:5")
( "core::LoadTimeValues_O::data_vectorPushExtend" "data_vectorPushExtend" "/home/meister/Dev/clasp/src/core/loadTimeValues.cc:263:1")
( "core::LoadTimeValues_O::symbols_vectorPushExtend" "symbols_vectorPushExtend" "/home/meister/Dev/clasp/src/core/loadTimeValues.cc:275:1")
( "core::SmallMultimap_O::describe" "small_multimap_describe" "/home/meister/Dev/clasp/src/core/smallMultimap.cc:54:1")
( "core::SmallMultimap_O::describeRange" "small_multimap_describe_range" "/home/meister/Dev/clasp/src/core/smallMultimap.cc:60:1")
( "core::SmallMultimap_O::insert" "small_multimap_insert" "/home/meister/Dev/clasp/src/core/smallMultimap.cc:67:1")
( "adapt::ObjectSet_O::addObjects" "addObjects" "/home/meister/Dev/clasp/projects/cando/src/adapt/objectSet.cc:43:1")
( "adapt::ObjectSet_O::asCons" "asCons" "/home/meister/Dev/clasp/projects/cando/src/adapt/objectSet.cc:48:1")
( "adapt::ObjectSet_O::setUnion" "adapt:objectSetUnion" "/home/meister/Dev/clasp/projects/cando/src/adapt/objectSet.cc:56:1")
( "adapt::ObjectSet_O::intersection" "adapt:objectSetIntersection" "/home/meister/Dev/clasp/projects/cando/src/adapt/objectSet.cc:63:1")
( "adapt::ObjectSet_O::relativeComplement" "relativeComplement" "/home/meister/Dev/clasp/projects/cando/src/adapt/objectSet.cc:79:1")
( "adapt::ObjectSet_O::addObjectsInCons" "addObjectsInCons" "/home/meister/Dev/clasp/projects/cando/src/adapt/objectSet.cc:145:1")
( "chem::StereoisomerAtoms_O::atomNamesAsSymbolSet" "atomNamesAsSymbolSet" "/home/meister/Dev/clasp/projects/cando/src/chem/stereoisomerAtoms.cc:196:5")
( "chem::StereoisomerAtoms_O::atomWithName" "atomWithName" "/home/meister/Dev/clasp/projects/cando/src/chem/stereoisomerAtoms.cc:220:5")
( "chem::StereoisomerAtoms_O::atomWithId" "atomWithId" "/home/meister/Dev/clasp/projects/cando/src/chem/stereoisomerAtoms.cc:231:5")
( "chem::StereoisomerAtoms_O::index" "stereoisomer-atoms-index" "/home/meister/Dev/clasp/projects/cando/src/chem/stereoisomerAtoms.cc:236:5")
( "geom::CoordinateArray_O::value_getElement" "getElement" "/home/meister/Dev/clasp/projects/cando/src/geom/coordinateArray.cc:138:5")
( "geom::CoordinateArray_O::setElement" "setElement" "/home/meister/Dev/clasp/projects/cando/src/geom/coordinateArray.cc:144:5")
( "geom::CoordinateArray_O::multiplyByScalar" "multiplyByScalar" "/home/meister/Dev/clasp/projects/cando/src/geom/coordinateArray.cc:200:5")
( "geom::CoordinateArray_O::transform" "transform" "/home/meister/Dev/clasp/projects/cando/src/geom/coordinateArray.cc:225:5")
( "geom::CoordinateArray_O::asString" "asString" "/home/meister/Dev/clasp/projects/cando/src/geom/coordinateArray.cc:248:5")
( "geom::CoordinateArray_O::writeToStream" "write-to-stream" "/home/meister/Dev/clasp/projects/cando/src/geom/coordinateArray.cc:306:5")
( "core::Environment_O::setRuntimeEnvironment" "setRuntimeEnvironment" "/home/meister/Dev/clasp/src/core/environment.cc:231:1")
( "core::Environment_O::getParentEnvironment" "getParentEnvironment" "/home/meister/Dev/clasp/src/core/environment.cc:241:1")
( "core::Environment_O::environmentStackAsString" "environmentStackAsString" "/home/meister/Dev/clasp/src/core/environment.cc:345:1")
( "core::Environment_O::gather_metadata" "gather_metadata" "/home/meister/Dev/clasp/src/core/environment.cc:367:1")
( "core::Environment_O::lookupMetadata" "lookupMetadata" "/home/meister/Dev/clasp/src/core/environment.cc:374:1")
( "core::Environment_O::localMetadata" "localMetadata" "/home/meister/Dev/clasp/src/core/environment.cc:381:1")
( "core::Environment_O::classifyVariable" "classifyVariable" "/home/meister/Dev/clasp/src/core/environment.cc:658:1")
( "core::Environment_O::classifyTag" "classifyTag" "/home/meister/Dev/clasp/src/core/environment.cc:683:1")
( "core::Environment_O::classifyFunctionLookup" "classifyFunctionLookup" "/home/meister/Dev/clasp/src/core/environment.cc:699:1")
( "core::Environment_O::getBlockSymbolFrame" "getBlockSymbolFrame" "/home/meister/Dev/clasp/src/core/environment.cc:726:1")
( "core::Environment_O::countFunctionContainerEnvironments" "countFunctionContainerEnvironments" "/home/meister/Dev/clasp/src/core/environment.cc:754:1")
( "core::Environment_O::find_block_named_environment" "find_block_named_environment" "/home/meister/Dev/clasp/src/core/environment.cc:758:1")
( "core::Environment_O::find_unwindable_environment" "find_unwindable_environment" "/home/meister/Dev/clasp/src/core/environment.cc:767:1")
( "core::Environment_O::find_tagbody_tag_environment" "find_tagbody_tag_environment" "/home/meister/Dev/clasp/src/core/environment.cc:772:1")
( "core::ValueEnvironment_O::defineLexicalBinding" "valueEnvironment_defineLexicalBinding" "/home/meister/Dev/clasp/src/core/environment.cc:1024:1")
( "core::ValueEnvironment_O::defineSpecialBinding" "valueEnvironment_defineSpecialBinding" "/home/meister/Dev/clasp/src/core/environment.cc:1037:1")
( "core::FunctionValueEnvironment_O::bind_function" "bindFunction" "/home/meister/Dev/clasp/src/core/environment.cc:1315:1")
( "core::TagbodyEnvironment_O::addTag" "addTag" "/home/meister/Dev/clasp/src/core/environment.cc:1630:1")
( "core::MacroletEnvironment_O::addMacro" "addMacro" "/home/meister/Dev/clasp/src/core/environment.cc:1763:1")
( "core::SymbolMacroletEnvironment_O::addSymbolMacro" "addSymbolMacro" "/home/meister/Dev/clasp/src/core/environment.cc:1789:1")
)
